2atg
From Proteopedia
(Difference between revisions)
m (Protected "2atg" [edit=sysop:move=sysop]) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2atg.png|left|200px]] | ||
| - | + | ==NMR structure of Retrocyclin-2 in SDS== | |
| + | <StructureSection load='2atg' size='340' side='right'caption='[[2atg]]' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2atg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ATG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ATG FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2atg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2atg OCA], [https://pdbe.org/2atg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2atg RCSB], [https://www.ebi.ac.uk/pdbsum/2atg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2atg ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Retrocyclins are circular mini-defensins with significant potential as agents against human immunodeficiency virus, influenza A, and herpes simplex virus. Retrocyclins bind carbohydrate-containing surface molecules such as gp120 and CD4 with high affinity (Kd, 10-100 nM), promoting their localization on cell membranes. The structural features important for activity have yet to be fully elucidated, but here, we have determined the first three-dimensional structure of a retrocyclin, namely, one of the most potent forms, retrocyclin-2. In the presence of SDS micelles, a well-defined beta-hairpin braced by three disulfide bonds that defines the cystine ladder motif is present. By contrast, a well-defined structure could not be determined in aqueous solution, suggesting that the presence of SDS micelles stabilizes the extended conformation of retrocyclin-2. Translational diffusion measurements indicate that retrocyclin-2 interacts with the SDS micelles, and such a membrane-like interaction may be an important feature in the mechanism of action of these antimicrobial peptides. Analytical ultracentrifugation and the NMR data indicated that retrocyclin-2 self-associates to form a trimer in a concentration-dependent manner. The ability to self-associate may contribute to the high-affinity binding of retrocyclins for glycoproteins by increasing the valency and enhancing the ability of retrocyclins to cross-link cell surface glycoproteins. | ||
| - | + | Retrocyclin-2: structural analysis of a potent anti-HIV theta-defensin.,Daly NL, Chen YK, Rosengren KJ, Marx UC, Phillips ML, Waring AJ, Wang W, Lehrer RI, Craik DJ Biochemistry. 2007 Sep 4;46(35):9920-8. Epub 2007 Aug 8. PMID:17685559<ref>PMID:17685559</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | <div class="pdbe-citations 2atg" style="background-color:#fffaf0;"></div> | |
| - | + | == References == | |
| - | + | <references/> | |
| - | + | __TOC__ | |
| - | < | + | </StructureSection> |
| - | + | [[Category: Homo sapiens]] | |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: | + | [[Category: Chen YK]] |
| - | [[Category: | + | [[Category: Craik DJ]] |
| - | [[Category: | + | [[Category: Daly NL]] |
| - | [[Category: | + | [[Category: Lehrer RI]] |
| - | [[Category: | + | [[Category: Marx UC]] |
| - | [[Category: | + | [[Category: Phillips ML]] |
| - | [[Category: | + | [[Category: Rosengren KJ]] |
| - | [[Category: | + | [[Category: Wang W]] |
| - | [[Category: | + | [[Category: Waring AJ]] |
| - | [[Category: | + | |
| - | [[Category: | + | |
Current revision
NMR structure of Retrocyclin-2 in SDS
| |||||||||||
Categories: Homo sapiens | Large Structures | Chen YK | Craik DJ | Daly NL | Lehrer RI | Marx UC | Phillips ML | Rosengren KJ | Wang W | Waring AJ
