This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2z8q

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:26, 1 November 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2z8q.png|left|200px]]
 
-
{{STRUCTURE_2z8q| PDB=2z8q | SCENE= }}
+
==ferredoxin from Pyrococcus furiosus, D14C variant==
-
 
+
<StructureSection load='2z8q' size='340' side='right'caption='[[2z8q]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
===ferredoxin from Pyrococcus furiosus, D14C variant===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2z8q]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Q OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z8Q FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
[[2z8q]] is a 2 chain structure of [[Ferredoxin]] with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z8Q OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z8q FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z8q OCA], [https://pdbe.org/2z8q PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z8q RCSB], [https://www.ebi.ac.uk/pdbsum/2z8q PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z8q ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FER_PYRFU FER_PYRFU] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/2z8q_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z8q ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
*[[Ferredoxin|Ferredoxin]]
*[[Ferredoxin|Ferredoxin]]
-
*[[Journal:JBIC:10|Journal:JBIC:10]]
+
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
-
*[[User:Michael Skovbo Windahl|User:Michael Skovbo Windahl]]
+
*[[Iron–sulfur proteins|Iron–sulfur proteins]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">DOI 10.1007/s00775-011-0778-7</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Pyrococcus furiosus dsm 3638]]
+
[[Category: Pyrococcus furiosus DSM 3638]]
-
[[Category: Christensen, H E.M.]]
+
[[Category: Christensen HEM]]
-
[[Category: Harris, P.]]
+
[[Category: Harris P]]
-
[[Category: Johannessen, M N.]]
+
[[Category: Johannessen MN]]
-
[[Category: Electron transport]]
+
-
[[Category: Ferredoxin iron-sulfur cluster]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Pyrococcus furiosus]]
+
-
[[Category: Transport]]
+
-
[[Category: Two molecules in asymmetric unit]]
+

Current revision

ferredoxin from Pyrococcus furiosus, D14C variant

PDB ID 2z8q

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools