This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3lo3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:36, 2 January 2019) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3lo3.png|left|200px]]
 
-
{{STRUCTURE_3lo3| PDB=3lo3 | SCENE= }}
+
==The crystal structure of a conserved functionally unknown protein from Colwellia psychrerythraea 34H.==
-
 
+
<StructureSection load='3lo3' size='340' side='right' caption='[[3lo3]], [[Resolution|resolution]] 2.38&Aring;' scene=''>
-
===The crystal structure of a conserved functionally unknown protein from Colwellia psychrerythraea 34H.===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3lo3]] is a 28 chain structure with sequence from [http://en.wikipedia.org/wiki/Colp3 Colp3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LO3 FirstGlance]. <br>
-
 
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
==About this Structure==
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[3lo3]] is a 28 chain structure with sequence from [http://en.wikipedia.org/wiki/Colwellia_psychrerythraea Colwellia psychrerythraea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LO3 OCA].
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CPS_1673 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=167879 COLP3])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lo3 OCA], [http://pdbe.org/3lo3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lo3 RCSB], [http://www.ebi.ac.uk/pdbsum/3lo3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lo3 ProSAT]</span></td></tr>
 +
</table>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lo/3lo3_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lo3 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
*[[Jmol/Visualizing large molecules|Jmol/Visualizing large molecules]]
*[[Jmol/Visualizing large molecules|Jmol/Visualizing large molecules]]
-
[[Category: Colwellia psychrerythraea]]
+
__TOC__
-
[[Category: Bearden, J.]]
+
</StructureSection>
-
[[Category: Joachimiak, A.]]
+
[[Category: Colp3]]
-
[[Category: Li, H.]]
+
[[Category: Bearden, J]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Joachimiak, A]]
-
[[Category: Tan, K.]]
+
[[Category: Li, H]]
 +
[[Category: Structural genomic]]
 +
[[Category: Tan, K]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Structure genomic]]
+
[[Category: Unknown function]]
[[Category: Unknown function]]

Current revision

The crystal structure of a conserved functionally unknown protein from Colwellia psychrerythraea 34H.

3lo3, resolution 2.38Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools