This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3okr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:41, 6 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3okr.png|left|200px]]
 
-
{{STRUCTURE_3okr| PDB=3okr | SCENE= }}
+
==Structure of Mtb apo 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase (IspD)==
 +
<StructureSection load='3okr' size='340' side='right'caption='[[3okr]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3okr]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OKR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OKR FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3okr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3okr OCA], [https://pdbe.org/3okr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3okr RCSB], [https://www.ebi.ac.uk/pdbsum/3okr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3okr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ISPD_MYCTU ISPD_MYCTU] Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP) (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ok/3okr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3okr ConSurf].
 +
<div style="clear:both"></div>
-
===Structure of Mtb apo 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase (IspD)===
+
==See Also==
-
 
+
*[[MEP cytidylyltransferase 3D structures|MEP cytidylyltransferase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[3okr]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OKR OCA].
+
[[Category: Large Structures]]
-
[[Category: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase]]
+
[[Category: Mycobacterium tuberculosis H37Rv]]
-
[[Category: Mycobacterium tuberculosis]]
+
[[Category: Bruning JB]]
-
[[Category: Bruning, J B.]]
+
[[Category: Reddy MCM]]
-
[[Category: Reddy, M C.M.]]
+
[[Category: Sacchettini JC]]
-
[[Category: Sacchettini, J C.]]
+
[[Category: Thurman C]]
-
[[Category: TBSGC, TB Structural Genomics Consortium.]]
+
-
[[Category: Thurman, C.]]
+
-
[[Category: 2-c-methyl-d-erythritol 4-phosphate cytidyltransferase]]
+
-
[[Category: Ispd]]
+
-
[[Category: Mtb]]
+
-
[[Category: Mycobacterium tuberculosis]]
+
-
[[Category: Tb]]
+
-
[[Category: Tb structural genomics consortium]]
+
-
[[Category: Tbsgc]]
+
-
[[Category: Transferase]]
+
-
[[Category: Tryptophan synthesis]]
+

Current revision

Structure of Mtb apo 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase (IspD)

PDB ID 3okr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools