This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ffm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:16, 1 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:4ffm.jpg|left|200px]]
 
-
{{STRUCTURE_4ffm| PDB=4ffm | SCENE= }}
+
==PylC in complex with L-lysine-Ne-D-ornithine (cocrystallized with L-lysine-Ne-D-ornithine)==
-
 
+
<StructureSection load='4ffm' size='340' side='right'caption='[[4ffm]], [[Resolution|resolution]] 1.91&Aring;' scene=''>
-
===PylC in complex with L-lysine-Ne-D-ornithine (cocrystallized with L-lysine-Ne-D-ornithine)===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[4ffm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_barkeri_str._Fusaro Methanosarcina barkeri str. Fusaro]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4FFM FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.91&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0TF:N~6~-D-ORNITHYL-L-LYSINE'>0TF</scene>, <scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
[[4ffm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Methanosarcina_barkeri Methanosarcina barkeri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4FFM OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ffm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ffm OCA], [https://pdbe.org/4ffm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ffm RCSB], [https://www.ebi.ac.uk/pdbsum/4ffm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ffm ProSAT]</span></td></tr>
-
[[Category: Methanosarcina barkeri]]
+
</table>
-
[[Category: Bacher, A.]]
+
== Function ==
-
[[Category: Beck, P.]]
+
[https://www.uniprot.org/uniprot/PYLC_METBF PYLC_METBF] Is required for the biosynthesis of pyrrolysine (By similarity). Catalyzes the ATP-dependent ligation between (3R)-3-methyl-D-ornithine and L-lysine, leading to (3R)-3-methyl-D-ornithyl-N6-L-lysine (Probable).[UniProtKB:Q8TUC0]<ref>PMID:22985965</ref>
-
[[Category: Groll, M.]]
+
== References ==
-
[[Category: List, A.]]
+
<references/>
-
[[Category: Quitterer, F.]]
+
__TOC__
-
[[Category: Amino acid]]
+
</StructureSection>
-
[[Category: Atp-binding]]
+
[[Category: Large Structures]]
-
[[Category: Atp-grasp fold]]
+
[[Category: Methanosarcina barkeri str. Fusaro]]
-
[[Category: Biosynthesis of pyrrolysine]]
+
[[Category: Bacher A]]
-
[[Category: Cytosol]]
+
[[Category: Beck P]]
-
[[Category: Isopeptide bond formation]]
+
[[Category: Groll M]]
-
[[Category: L-lysine and 3r-methyl-d-ornithine]]
+
[[Category: List A]]
-
[[Category: Ligase]]
+
[[Category: Quitterer F]]
-
[[Category: Ligase-product complex]]
+

Current revision

PylC in complex with L-lysine-Ne-D-ornithine (cocrystallized with L-lysine-Ne-D-ornithine)

PDB ID 4ffm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools