This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1k77

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:58, 3 April 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1k77.gif|left|200px]]<br /><applet load="1k77" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1k77, resolution 1.63&Aring;" />
 
-
'''Crystal Structure of EC1530, a Putative Oxygenase from Escherichia coli'''<br />
 
-
==About this Structure==
+
==Crystal Structure of EC1530, a Putative Oxygenase from Escherichia coli==
-
1K77 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with <scene name='pdbligand=MG:'>MG</scene>, <scene name='pdbligand=GOL:'>GOL</scene> and <scene name='pdbligand=FMT:'>FMT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K77 OCA].
+
<StructureSection load='1k77' size='340' side='right'caption='[[1k77]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
-
 
+
== Structural highlights ==
-
==Reference==
+
<table><tr><td colspan='2'>[[1k77]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K77 FirstGlance]. <br>
-
Crystal structure of Escherichia coli EC1530, a glyoxylate induced protein YgbM., Kim Y, Skarina T, Beasley S, Laskowski R, Arrowsmith C, Joachimiak A, Edwards A, Savchenko A, Proteins. 2002 Aug 1;48(2):427-30. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=12112708 12112708]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.63&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k77 OCA], [https://pdbe.org/1k77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k77 RCSB], [https://www.ebi.ac.uk/pdbsum/1k77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k77 ProSAT], [https://www.topsan.org/Proteins/MCSG/1k77 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/OTNI_ECOLI OTNI_ECOLI] Catalyzes the isomerization of 2-oxo-tetronate to 3-oxo-tetronate.[UniProtKB:Q57151]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k7/1k77_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k77 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Arrowsmith, C.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Beasley, S.]]
+
[[Category: Beasley S]]
-
[[Category: Edwards, A.]]
+
[[Category: Edwards AM]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Joachimiak A]]
-
[[Category: Kim, Y.]]
+
[[Category: Kim Y]]
-
[[Category: Laskowski, R.]]
+
[[Category: Laskowski R]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Savchenko A]]
-
[[Category: Savechenko, A.]]
+
[[Category: Skarina T]]
-
[[Category: Skarina, T.]]
+
-
[[Category: FMT]]
+
-
[[Category: GOL]]
+
-
[[Category: MG]]
+
-
[[Category: hypothetical protein]]
+
-
[[Category: mcsg]]
+
-
[[Category: midwest center for structural genomics]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomics]]
+
-
[[Category: tim barrel]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 13:30:52 2008''
+

Current revision

Crystal Structure of EC1530, a Putative Oxygenase from Escherichia coli

PDB ID 1k77

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools