1qyz
From Proteopedia
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- | [[Image:1qyz.png|left|200px]] | ||
- | + | ==Characterization of the malformed, recombinant cytochrome rC552== | |
+ | <StructureSection load='1qyz' size='340' side='right'caption='[[1qyz]], [[Resolution|resolution]] 1.40Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[1qyz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QYZ FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HCO:2-ACETYL-PROTOPORPHYRIN+IX'>HCO</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qyz OCA], [https://pdbe.org/1qyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qyz RCSB], [https://www.ebi.ac.uk/pdbsum/1qyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qyz ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/CY552_THETH CY552_THETH] This monoheme basic protein appears to function as an electron donor to cytochrome oxidase in T.thermophilus. | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qy/1qyz_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qyz ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Expression of the truncated (lacking an N-terminal signal sequence) structural gene of Thermus thermophilus cytochrome c(552) in the cytoplasm of Escherichia coli yields both dimeric (rC(557)) and monomeric (rC(552)) cytochrome c-like proteins [Keightley, J. A., et al. (1998) J. Biol. Chem. 273, 12006-12016], which form spontaneously without the involvement of cytochrome c maturation factors. Cytochrome rC(557) is comprised of a dimer and has been structurally characterized [McRee, D., et al. (2001) J. Biol. Chem. 276, 6537-6544]. Unexpectedly, the monomeric rC(552) transforms spontaneously to a cytochrome-like chromophore having, in its reduced state, the Q(oo) transition (alpha-band) at 572 nm (therefore called p572). The X-ray crystallographic structure of rC(552), at 1.41 A resolution, shows that the 2-vinyl group of heme ring I is converted to a [heme-CO-CH(2)-S-CH(2)-C(alpha)] conjugate with cysteine 11. Electron density maps obtained from isomorphous crystals of p572 at 1.61 A resolution reveal that the 2-vinyl group has been oxidized to a formyl group. This explains the lower energy of the Q(oo)() transition, the presence of a new, high-frequency band in the resonance Raman spectra at 1666 cm(-1) for oxidized and at 1646 cm(-1) for reduced samples, and the greatly altered, paramagnetically shifted (1)H NMR spectrum observed for this species. The overall process defines a novel mechanism for oxidation of the 2-vinyl group to a 2-formyl group and adds to the surprising array of chemical reactions that occur in the interaction of heme with the CXXCH sequence motif in apocytochromes c. | ||
- | + | Cytochrome rC552, formed during expression of the truncated, Thermus thermophilus cytochrome c552 gene in the cytoplasm of Escherichia coli, reacts spontaneously to form protein-bound 2-formyl-4-vinyl (Spirographis) heme.,Fee JA, Todaro TR, Luna E, Sanders D, Hunsicker-Wang LM, Patel KM, Bren KL, Gomez-Moran E, Hill MG, Ai J, Loehr TM, Oertling WA, Williams PA, Stout CD, McRee D, Pastuszyn A Biochemistry. 2004 Sep 28;43(38):12162-76. PMID:15379555<ref>PMID:15379555</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | + | <div class="pdbe-citations 1qyz" style="background-color:#fffaf0;"></div> | |
- | + | ||
==See Also== | ==See Also== | ||
- | *[[Cytochrome c|Cytochrome c]] | + | *[[Cytochrome c nitrite reductase|Cytochrome c nitrite reductase]] |
- | + | == References == | |
- | == | + | <references/> |
- | < | + | __TOC__ |
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
[[Category: Thermus thermophilus]] | [[Category: Thermus thermophilus]] | ||
- | [[Category: Ai | + | [[Category: Ai J]] |
- | [[Category: Bren | + | [[Category: Bren KL]] |
- | [[Category: Fee | + | [[Category: Fee JA]] |
- | [[Category: Gomez-Moran | + | [[Category: Gomez-Moran E]] |
- | [[Category: Hill | + | [[Category: Hill MG]] |
- | [[Category: Hunsicker-Wang | + | [[Category: Hunsicker-Wang LM]] |
- | [[Category: Loehr | + | [[Category: Loehr TM]] |
- | [[Category: Luna | + | [[Category: Luna E]] |
- | [[Category: McRee | + | [[Category: McRee D]] |
- | [[Category: Oertling | + | [[Category: Oertling WA]] |
- | [[Category: Pastuszyn | + | [[Category: Pastuszyn A]] |
- | [[Category: Patel | + | [[Category: Patel KM]] |
- | [[Category: Sanders | + | [[Category: Sanders D]] |
- | [[Category: Stout | + | [[Category: Stout CD]] |
- | [[Category: Todaro | + | [[Category: Todaro TR]] |
- | [[Category: Williams | + | [[Category: Williams PA]] |
- | + | ||
- | + |
Current revision
Characterization of the malformed, recombinant cytochrome rC552
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Categories: Large Structures | Thermus thermophilus | Ai J | Bren KL | Fee JA | Gomez-Moran E | Hill MG | Hunsicker-Wang LM | Loehr TM | Luna E | McRee D | Oertling WA | Pastuszyn A | Patel KM | Sanders D | Stout CD | Todaro TR | Williams PA