1kyt
From Proteopedia
(Difference between revisions)
| (16 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1kyt.gif|left|200px]]<br /><applet load="1kyt" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1kyt, resolution 1.70Å" /> | ||
| - | '''Crystal Structure of Thermoplasma acidophilum 0175 (APC014)'''<br /> | ||
| - | == | + | ==Crystal Structure of Thermoplasma acidophilum 0175 (APC014)== |
| - | + | <StructureSection load='1kyt' size='340' side='right'caption='[[1kyt]], [[Resolution|resolution]] 1.70Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[1kyt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermoplasma_acidophilum Thermoplasma acidophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KYT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KYT FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kyt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kyt OCA], [https://pdbe.org/1kyt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kyt RCSB], [https://www.ebi.ac.uk/pdbsum/1kyt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kyt ProSAT], [https://www.topsan.org/Proteins/MCSG/1kyt TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PGP_THEAC PGP_THEAC] Catalyzes the dephosphorylation of 2-phosphoglycolate. Also has significant, but less efficient, pyrophosphatase activity, since it is able to catalyze the release of phosphate from inorganic pyrophosphate (PPi).<ref>PMID:14555659</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ky/1kyt_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kyt ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Thermoplasma acidophilum]] | [[Category: Thermoplasma acidophilum]] | ||
| - | [[Category: Cheung | + | [[Category: Cheung F]] |
| - | [[Category: Christendat | + | [[Category: Christendat D]] |
| - | [[Category: Edwards | + | [[Category: Edwards A]] |
| - | [[Category: Gu | + | [[Category: Gu J]] |
| - | [[Category: Joachimiak | + | [[Category: Joachimiak A]] |
| - | [[Category: Kim | + | [[Category: Kim Y]] |
| - | + | [[Category: Pennycooke M]] | |
| - | [[Category: Pennycooke | + | [[Category: Xu X]] |
| - | [[Category: Xu | + | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal Structure of Thermoplasma acidophilum 0175 (APC014)
| |||||||||||
