2vvc
From Proteopedia
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- | [[Image:2vvc.png|left|200px]] | ||
- | + | ==Aminopyrrolidine Factor Xa inhibitor== | |
+ | <StructureSection load='2vvc' size='340' side='right'caption='[[2vvc]], [[Resolution|resolution]] 1.95Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[2vvc]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VVC FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=LZF:5-CHLORO-N-[(3S,4S)-1-(2-{[2-FLUORO-4-(2-OXOPYRIDIN-1(2H)-YL)PHENYL]AMINO}-2-OXOETHYL)-4-METHOXYPYRROLIDIN-3-YL]THIOPHENE-2-CARBOXAMIDE'>LZF</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vvc OCA], [https://pdbe.org/2vvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vvc RCSB], [https://www.ebi.ac.uk/pdbsum/2vvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vvc ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Disease == | ||
+ | [https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting. | ||
+ | == Evolutionary Conservation == | ||
+ | [[Image:Consurf_key_small.gif|200px|right]] | ||
+ | Check<jmol> | ||
+ | <jmolCheckbox> | ||
+ | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/vv/2vvc_consurf.spt"</scriptWhenChecked> | ||
+ | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
+ | <text>to colour the structure by Evolutionary Conservation</text> | ||
+ | </jmolCheckbox> | ||
+ | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2vvc ConSurf]. | ||
+ | <div style="clear:both"></div> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Starting from a hit identified by focused screening, 3-aminopyrrolidine factor Xa inhibitors were designed. The binding mode as determined by X-ray structural analysis as well as the pharmacokinetic behaviour of selected compounds is discussed. | ||
- | + | Design of novel aminopyrrolidine factor Xa inhibitors from a screening hit.,Zbinden KG, Anselm L, Banner DW, Benz J, Blasco F, Decoret G, Himber J, Kuhn B, Panday N, Ricklin F, Risch P, Schlatter D, Stahl M, Thomi S, Unger R, Haap W Eur J Med Chem. 2009 Jul;44(7):2787-95. Epub 2009 Jan 3. PMID:19200624<ref>PMID:19200624</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | + | </div> | |
- | + | <div class="pdbe-citations 2vvc" style="background-color:#fffaf0;"></div> | |
- | + | ||
==See Also== | ==See Also== | ||
*[[Factor Xa|Factor Xa]] | *[[Factor Xa|Factor Xa]] | ||
- | + | == References == | |
- | == | + | <references/> |
- | < | + | __TOC__ |
- | + | </StructureSection> | |
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
- | [[Category: Banner | + | [[Category: Large Structures]] |
- | [[Category: Benz | + | [[Category: Banner DW]] |
- | [[Category: Blasco | + | [[Category: Benz JM]] |
- | [[Category: Decoret | + | [[Category: Blasco F]] |
- | [[Category: Groebke-Zbinden | + | [[Category: Decoret G]] |
- | [[Category: Haap | + | [[Category: Groebke-Zbinden K]] |
- | [[Category: Himber | + | [[Category: Haap W]] |
- | [[Category: Kuhn | + | [[Category: Himber J]] |
- | [[Category: Panday | + | [[Category: Kuhn B]] |
- | [[Category: Ricklin | + | [[Category: Panday N]] |
- | [[Category: Risch | + | [[Category: Ricklin F]] |
- | [[Category: Schlatter | + | [[Category: Risch P]] |
- | [[Category: Stahl | + | [[Category: Schlatter D]] |
- | [[Category: Unger | + | [[Category: Stahl M]] |
- | + | [[Category: Unger R]] | |
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Current revision
Aminopyrrolidine Factor Xa inhibitor
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Categories: Homo sapiens | Large Structures | Banner DW | Benz JM | Blasco F | Decoret G | Groebke-Zbinden K | Haap W | Himber J | Kuhn B | Panday N | Ricklin F | Risch P | Schlatter D | Stahl M | Unger R