1gdv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (04:32, 17 October 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1gdv.png|left|200px]]
 
-
{{STRUCTURE_1gdv| PDB=1gdv | SCENE= }}
+
==CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION==
 +
<StructureSection load='1gdv' size='340' side='right'caption='[[1gdv]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1gdv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neopyropia_yezoensis Neopyropia yezoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GDV FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gdv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gdv OCA], [https://pdbe.org/1gdv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gdv RCSB], [https://www.ebi.ac.uk/pdbsum/1gdv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gdv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CYC6_NEOYE CYC6_NEOYE] Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gd/1gdv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1gdv ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structure of cytochrome c(6) from the red alga Porphyra yezoensis has been determined at 1.57 A resolution. The crystal is tetragonal and belongs to space group P4(3)2(1)2, with unit-cell parameters a = b = 49.26 (3), c = 83.45 (4) A and one molecule per asymmetric unit. The structure was solved by the molecular-replacement method and refined with X-PLOR to an R factor of 19.9% and a free R factor of 25.4%. The overall structure of cytochrome c(6) follows the topology of class I c-type cytochromes in which the heme prosthetic group covalently binds to Cys14 and Cys17, and the iron has an octahedral coordination with His18 and Met58 as the axial ligands. The sequence and the structure of the eukaryotic red algal cytochrome c(6) are very similar to those of a prokaryotic cyanobacterial cytochrome c(6) rather than those of eukaryotic green algal c(6) cytochromes.
-
===CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION===
+
Structure of cytochrome c6 from the red alga Porphyra yezoensis at 1. 57 A resolution.,Yamada S, Park SY, Shimizu H, Koshizuka Y, Kadokura K, Satoh T, Suruga K, Ogawa M, Isogai Y, Nishio T, Shiro Y, Oku T Acta Crystallogr D Biol Crystallogr. 2000 Dec;56(Pt 12):1577-82. PMID:11092924<ref>PMID:11092924</ref>
-
{{ABSTRACT_PUBMED_11092924}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1gdv" style="background-color:#fffaf0;"></div>
-
[[1gdv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyropia_yezoensis Pyropia yezoensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GDV OCA].
+
== References ==
-
 
+
<references/>
-
==See Also==
+
__TOC__
-
*[[Cytochrome c|Cytochrome c]]
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
==Reference==
+
[[Category: Neopyropia yezoensis]]
-
<ref group="xtra">PMID:011092924</ref><references group="xtra"/>
+
[[Category: Oku T]]
-
[[Category: Pyropia yezoensis]]
+
[[Category: Park S-Y]]
-
[[Category: Oku, T.]]
+
[[Category: Shimizu H]]
-
[[Category: Park, S Y.]]
+
[[Category: Shiro Y]]
-
[[Category: Shimizu, H.]]
+
[[Category: Yamada S]]
-
[[Category: Shiro, Y.]]
+
-
[[Category: Yamada, S.]]
+
-
[[Category: Cytochrome c6]]
+
-
[[Category: Electron transport]]
+
-
[[Category: Red alga]]
+

Current revision

CRYSTAL STRUCTURE OF CYTOCHROME C6 FROM RED ALGA PORPHYRA YEZOENSIS AT 1.57 A RESOLUTION

PDB ID 1gdv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1gdv"
Personal tools