2axe

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:47, 21 November 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2axe.png|left|200px]]
 
-
{{STRUCTURE_2axe| PDB=2axe | SCENE= }}
+
==IODINATED COMPLEX OF ACETYL XYLAN ESTERASE AT 1.80 ANGSTROMS==
 +
<StructureSection load='2axe' size='340' side='right'caption='[[2axe]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2axe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Talaromyces_purpureogenus Talaromyces purpureogenus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AXE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AXE FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TYI:3,5-DIIODOTYROSINE'>TYI</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2axe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2axe OCA], [https://pdbe.org/2axe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2axe RCSB], [https://www.ebi.ac.uk/pdbsum/2axe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2axe ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AXE2_TALPU AXE2_TALPU] Degrades acetylated xylans by cleaving acetyl side groups from the hetero-xylan backbone.<ref>PMID:8756392</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ax/2axe_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2axe ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Enzymatic and non-enzymatic iodination of the amino acid tyrosine is a well known phenomenon. The iodination technique has been widely used for labeling proteins. Using high-resolution X-ray crystallographic techniques, the chemical and three-dimensional structures of iodotyrosines formed by non-enzymatic incorporation of I atoms into tyrosine residues of a crystalline protein are described. Acetylxylan esterase (AXE II; 207 amino-acid residues) from Penicillium purpurogenum has substrate specificities towards acetate esters of D-xylopyranose residues in xylan and belongs to a new class of alpha/beta hydrolases. The crystals of the enzyme are highly ordered, tightly packed and diffract to better than sub-angstrom resolution at 85 K. The iodination technique has been utilized to prepare an isomorphous derivative of the AXE II crystal. The structure of the enzyme determined at 1.10 A resolution exclusively by normal and anomalous scattering from I atoms, along with the structure of the iodinated complex at 1.80 A resolution, demonstrate the formation of covalent bonds between I atoms and C atoms at ortho positions to the hydroxyl groups of two tyrosyl moieties, yielding iodotyrosines.
-
===IODINATED COMPLEX OF ACETYL XYLAN ESTERASE AT 1.80 ANGSTROMS===
+
Determination of a protein structure by iodination: the structure of iodinated acetylxylan esterase.,Ghosh D, Erman M, Sawicki M, Lala P, Weeks DR, Li N, Pangborn W, Thiel DJ, Jornvall H, Gutierrez R, Eyzaguirre J Acta Crystallogr D Biol Crystallogr. 1999 Apr;55(Pt 4):779-84. PMID:10089308<ref>PMID:10089308</ref>
-
{{ABSTRACT_PUBMED_10089308}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 2axe" style="background-color:#fffaf0;"></div>
-
[[2axe]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Penicillium_purpurogenum Penicillium purpurogenum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AXE OCA].
+
==See Also==
==See Also==
-
*[[Acetylxylan esterase|Acetylxylan esterase]]
+
*[[Acetylxylan esterase 3D structures|Acetylxylan esterase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:010089308</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Acetylesterase]]
+
</StructureSection>
-
[[Category: Penicillium purpurogenum]]
+
[[Category: Large Structures]]
-
[[Category: Erman, M.]]
+
[[Category: Talaromyces purpureogenus]]
-
[[Category: Eyzaguirre, J.]]
+
[[Category: Erman M]]
-
[[Category: Ghosh, D.]]
+
[[Category: Eyzaguirre J]]
-
[[Category: Jornvall, H.]]
+
[[Category: Ghosh D]]
-
[[Category: Lala, P.]]
+
[[Category: Jornvall H]]
-
[[Category: Li, N.]]
+
[[Category: Lala P]]
-
[[Category: Pangborn, W.]]
+
[[Category: Li N]]
-
[[Category: Sawicki, M W.]]
+
[[Category: Pangborn W]]
-
[[Category: Thiel, D J.]]
+
[[Category: Sawicki MW]]
-
[[Category: Weeks, D R.]]
+
[[Category: Thiel DJ]]
-
[[Category: Esterase]]
+
[[Category: Weeks DR]]
-
[[Category: Hydrolase]]
+
-
[[Category: Iodotyrosine]]
+

Current revision

IODINATED COMPLEX OF ACETYL XYLAN ESTERASE AT 1.80 ANGSTROMS

PDB ID 2axe

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools