This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3um7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:47, 20 July 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3um7.png|left|200px]]
 
-
{{STRUCTURE_3um7| PDB=3um7 | SCENE= }}
+
==Crystal structure of the human two pore domain K+ ion channel TRAAK (K2P4.1)==
 +
<StructureSection load='3um7' size='340' side='right'caption='[[3um7]], [[Resolution|resolution]] 3.31&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3um7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UM7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UM7 FirstGlance]. <br>
 +
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
 +
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">KCNK4, TRAAK ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3um7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3um7 OCA], [https://pdbe.org/3um7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3um7 RCSB], [https://www.ebi.ac.uk/pdbsum/3um7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3um7 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/KCNK4_HUMAN KCNK4_HUMAN]] Voltage insensitive, instantaneous, outwardly rectifying potassium channel. Outward rectification is reversed at high external K(+) concentrations (By similarity).
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
TRAAK channels, members of the two-pore domain K(+) (potassium ion) channel family K2P, are expressed almost exclusively in the nervous system and control the resting membrane potential. Their gating is sensitive to polyunsaturated fatty acids, mechanical deformation of the membrane, and temperature changes. Physiologically, these channels appear to control the noxious input threshold for temperature and pressure sensitivity in dorsal root ganglia neurons. We present the crystal structure of human TRAAK at a resolution of 3.8 angstroms. The channel comprises two protomers, each containing two distinct pore domains, which create a two-fold symmetric K(+) channel. The extracellular surface features a helical cap, 35 angstroms tall, that creates a bifurcated pore entryway and accounts for the insensitivity of two-pore domain K(+) channels to inhibitory toxins. Two diagonally opposed gate-forming inner helices form membrane-interacting structures that may underlie this channel's sensitivity to chemical and mechanical properties of the cell membrane.
-
===Crystal structure of the human two pore domain K+ ion channel TRAAK (K2P4.1)===
+
Crystal structure of the human K2P TRAAK, a lipid- and mechano-sensitive K+ ion channel.,Brohawn SG, del Marmol J, MacKinnon R Science. 2012 Jan 27;335(6067):436-41. PMID:22282805<ref>PMID:22282805</ref>
-
{{ABSTRACT_PUBMED_22282805}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3um7" style="background-color:#fffaf0;"></div>
-
[[3um7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UM7 OCA].
+
==See Also==
==See Also==
-
*[[Potassium Channel|Potassium Channel]]
+
*[[Potassium channel 3D structures|Potassium channel 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:022282805</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Homo sapiens]]
+
</StructureSection>
-
[[Category: Brohawn, S G.]]
+
[[Category: Human]]
-
[[Category: MacKinnon, R.]]
+
[[Category: Large Structures]]
 +
[[Category: Brohawn, S G]]
 +
[[Category: MacKinnon, R]]
[[Category: Metal transport]]
[[Category: Metal transport]]
[[Category: Potassium ion channel]]
[[Category: Potassium ion channel]]

Current revision

Crystal structure of the human two pore domain K+ ion channel TRAAK (K2P4.1)

PDB ID 3um7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools