1zv2

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[[Image:1zv2.png|left|200px]]
 
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{{STRUCTURE_1zv2| PDB=1zv2 | SCENE= }}
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==Cu-containing nitrite reductase==
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<StructureSection load='1zv2' size='340' side='right'caption='[[1zv2]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1zv2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZV2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZV2 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zv2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zv2 OCA], [https://pdbe.org/1zv2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zv2 RCSB], [https://www.ebi.ac.uk/pdbsum/1zv2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zv2 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NIR_CERS5 NIR_CERS5]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zv/1zv2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zv2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Nitrite reductase is an enzyme operating in the denitrification pathway which catalyses the conversion of nitrite (NO2(-)) to gaseous nitric oxide (NO). Here, crystal structures of the oxidized and reduced forms of the copper-containing nitrite reductase from Rhodobacter sphaeroides 2.4.3 are presented at 1.74 and 1.85 A resolution, respectively. Whereas the structure of the enzyme is very similar to those of other copper-containing nitrite reductases, folding as a trimer and containing two copper sites per monomer, the structures reported here enable conformational differences between the oxidized and reduced forms of the enzyme to be identified. In the type 1 copper site, a rotational perturbation of the side chain of the copper ligand Met182 occurs upon reduction. At the type 2 copper site, a dual conformation of the catalytic residue His287 is observed in the oxidized structure but is lacking in the reduced structure, such that the interactions of the oxidized type 2 copper ion can be regarded as adopting octahedral geometry. These findings shed light on the structural mechanism of the reduction of a copper-bound nitrite to nitric oxide and water.
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===Cu-containing nitrite reductase===
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Structures of the oxidized and reduced forms of nitrite reductase from Rhodobacter sphaeroides 2.4.3 at high pH: changes in the interactions of the type 2 copper.,Jacobson F, Guo H, Olesen K, Okvist M, Neutze R, Sjolin L Acta Crystallogr D Biol Crystallogr. 2005 Sep;61(Pt 9):1190-8. Epub 2005, Aug 16. PMID:16131751<ref>PMID:16131751</ref>
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{{ABSTRACT_PUBMED_16131751}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 1zv2" style="background-color:#fffaf0;"></div>
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[[1zv2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZV2 OCA].
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==See Also==
==See Also==
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*[[Nitric reductase|Nitric reductase]]
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*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:016131751</ref><references group="xtra"/>
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__TOC__
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[[Category: Rhodobacter sphaeroides]]
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</StructureSection>
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[[Category: Guo, H.]]
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[[Category: Cereibacter sphaeroides]]
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[[Category: Jacobson, F.]]
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[[Category: Large Structures]]
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[[Category: Neutze, R.]]
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[[Category: Guo H]]
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[[Category: Okvist, M.]]
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[[Category: Jacobson F]]
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[[Category: Olesen, K.]]
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[[Category: Neutze R]]
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[[Category: Sjolin, L.]]
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[[Category: Okvist M]]
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[[Category: Copper protein]]
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[[Category: Olesen K]]
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[[Category: Denitrification]]
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[[Category: Sjolin L]]
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[[Category: Nitrite reduction]]
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[[Category: Oxidoreductase]]
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Current revision

Cu-containing nitrite reductase

PDB ID 1zv2

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