3a5b

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 23 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3a5b.png|left|200px]]
 
-
{{STRUCTURE_3a5b| PDB=3a5b | SCENE= }}
+
==Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH6.5 coordinates)==
 +
<StructureSection load='3a5b' size='340' side='right'caption='[[3a5b]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3a5b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A5B FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a5b OCA], [https://pdbe.org/3a5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a5b RCSB], [https://www.ebi.ac.uk/pdbsum/3a5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a5b ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q7M422_9DIPT Q7M422_9DIPT]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a5/3a5b_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a5b ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Haemoglobin component V (Hb V) from the midge larva Propsilocerus akamusi exhibits oxygen affinity despite the replacement of HisE7 and a pH-dependence of its functional properties. In order to understand the contribution of the distal residue to the ligand-binding properties and the pH-dependent structural changes in this insect Hb, the crystal structure of Hb V was determined under five different pH conditions. Structural comparisons of these Hb structures indicated that at neutral pH ArgE10 contributes to the stabilization of the haem-bound ligand molecule as a functional substitute for the nonpolar E7 residue. However, ArgE10 does not contribute to stabilization at acidic and alkaline pH because of the swinging movement of the Arg side chain under these conditions. This pH-dependent behaviour of Arg results in significant differences in the hydrogen-bond network on the distal side of the haem in the Hb V structures at different pH values. Furthermore, the change in pH results in a partial movement of the F helix, considering that coupled movements of ArgE10 and the F helix determine the haem location at each pH. These results suggested that Hb V retains its functional properties by adapting to the structural changes caused by amino-acid replacements.
-
===Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH6.5 coordinates)===
+
pH-dependent structural changes in haemoglobin component V from the midge larva Propsilocerus akamusi (Orthocladiinae, Diptera).,Kuwada T, Hasegawa T, Takagi T, Sato I, Shishikura F Acta Crystallogr D Biol Crystallogr. 2010 Mar;66(Pt 3):258-67. Epub 2010, Feb 12. PMID:20179337<ref>PMID:20179337</ref>
-
{{ABSTRACT_PUBMED_20179337}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 3a5b" style="background-color:#fffaf0;"></div>
-
[[3a5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Tokunagayusurika_akamusi Tokunagayusurika akamusi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A5B OCA].
+
==See Also==
==See Also==
-
*[[Hemoglobin|Hemoglobin]]
+
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:020179337</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Tokunagayusurika akamusi]]
[[Category: Tokunagayusurika akamusi]]
-
[[Category: Hasegawa, T.]]
+
[[Category: Hasegawa T]]
-
[[Category: Kuwada, T.]]
+
[[Category: Kuwada T]]
-
[[Category: Shishikura, F.]]
+
[[Category: Shishikura F]]
-
[[Category: Takagi, T.]]
+
[[Category: Takagi T]]
-
[[Category: Diptera]]
+
-
[[Category: Heme]]
+
-
[[Category: Hemoglobin]]
+
-
[[Category: Insect]]
+
-
[[Category: Midge larva]]
+
-
[[Category: Oxygen transport]]
+
-
[[Category: Propsilocerus akamusi]]
+
-
[[Category: Transport]]
+

Current revision

Crystal structure of a hemoglobin component V from Propsilocerus akamusi (pH6.5 coordinates)

PDB ID 3a5b

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools