2jxy

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[[Image:2jxy.png|left|200px]]
 
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{{STRUCTURE_2jxy| PDB=2jxy | SCENE= }}
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==Solution structure of the hemopexin-like domain of MMP12==
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<StructureSection load='2jxy' size='340' side='right'caption='[[2jxy]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2jxy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JXY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Macrophage_elastase Macrophage elastase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.65 3.4.24.65] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jxy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jxy OCA], [https://pdbe.org/2jxy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jxy RCSB], [https://www.ebi.ac.uk/pdbsum/2jxy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jxy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[https://www.uniprot.org/uniprot/MMP12_HUMAN MMP12_HUMAN]] May be involved in tissue injury and remodeling. Has significant elastolytic activity. Can accept large and small amino acids at the P1' site, but has a preference for leucine. Aromatic or hydrophobic residues are preferred at the P1 site, with small hydrophobic residues (preferably alanine) occupying P3.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jx/2jxy_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jxy ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The proteolytic activity of matrix metalloproteinases toward extracellular matrix components (ECM), cytokines, chemokines, and membrane receptors is crucial for several homeostatic and pathological processes. Active MMPs are a family of single-chain enzymes (23 family members in the human genome), most of which constituted by a catalytic domain and by a hemopexin-like domain connected by a linker. The X-ray structures of MMP-1 and MMP-2 suggest a conserved and well-defined spatial relationship between the two domains. Here we present structural data for MMP-12, suitably stabilized against self-hydrolysis, both in solution (NMR and SAXS) and in the solid state (X-ray), showing that the hemopexin-like and the catalytic domains experience conformational freedom with respect to each other on a time scale shorter than 10 (-8) s. Hints on the probable conformations are also obtained. This experimental finding opens new perspectives for the often hypothesized active role of the hemopexin-like domain in the enzymatic activity of MMPs.
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===Solution structure of the hemopexin-like domain of MMP12===
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Evidence of Reciprocal Reorientation of the Catalytic and Hemopexin-Like Domains of Full-Length MMP-12.,Bertini I, Calderone V, Fragai M, Jaiswal R, Luchinat C, Melikian M, Mylonas E, Svergun DI J Am Chem Soc. 2008 May 9;. PMID:18465858<ref>PMID:18465858</ref>
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{{ABSTRACT_PUBMED_18465858}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 2jxy" style="background-color:#fffaf0;"></div>
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[[2jxy]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JXY OCA].
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==See Also==
==See Also==
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*[[Elastase|Elastase]]
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*[[Matrix metalloproteinase 3D structures|Matrix metalloproteinase 3D structures]]
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*[[Matrix metalloproteinase|Matrix metalloproteinase]]
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:018465858</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Human]]
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[[Category: Large Structures]]
[[Category: Macrophage elastase]]
[[Category: Macrophage elastase]]
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[[Category: Bertini, I.]]
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[[Category: Bertini, I]]
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[[Category: Calderone, V.]]
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[[Category: Calderone, V]]
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[[Category: Fragai, M.]]
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[[Category: Fragai, M]]
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[[Category: Jaiswal, R.]]
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[[Category: Jaiswal, R]]
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[[Category: Luchinat, C.]]
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[[Category: Luchinat, C]]
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[[Category: Melikian, M.]]
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[[Category: Melikian, M]]
[[Category: B-sheet hydrophobic core]]
[[Category: B-sheet hydrophobic core]]
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[[Category: Calcium]]
[[Category: Extracellular matrix]]
[[Category: Extracellular matrix]]
[[Category: Glycoprotein]]
[[Category: Glycoprotein]]
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[[Category: Metal-binding]]
[[Category: Metal-binding]]
[[Category: Metalloprotease]]
[[Category: Metalloprotease]]
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[[Category: Polymorphism]]
[[Category: Protease]]
[[Category: Protease]]
[[Category: Secreted]]
[[Category: Secreted]]
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[[Category: Zinc]]
[[Category: Zymogen]]
[[Category: Zymogen]]

Current revision

Solution structure of the hemopexin-like domain of MMP12

PDB ID 2jxy

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