This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3e37

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:44, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3e37.png|left|200px]]
 
-
{{STRUCTURE_3e37| PDB=3e37 | SCENE= }}
+
==Protein farnesyltransferase complexed with bisubstrate ethylenediamine scaffold inhibitor 5==
-
 
+
<StructureSection load='3e37' size='340' side='right'caption='[[3e37]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
===Protein farnesyltransferase complexed with bisubstrate ethylenediamine scaffold inhibitor 5===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3e37]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E37 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E37 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_19246009}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ED5:TERT-BUTYL+4-({(2-{(4-CYANOPHENYL)[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]AMINO}ETHYL)[(2-METHYLPHENYL)SULFONYL]AMINO}METHYL)PIPERIDINE-1-CARBOXYLATE'>ED5</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e37 OCA], [https://pdbe.org/3e37 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e37 RCSB], [https://www.ebi.ac.uk/pdbsum/3e37 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e37 ProSAT]</span></td></tr>
-
[[3e37]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E37 OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FNTA_HUMAN FNTA_HUMAN] Catalyzes the transfer of a farnesyl or geranyl-geranyl moiety from farnesyl or geranyl-geranyl pyrophosphate to a cysteine at the fourth position from the C-terminus of several proteins having the C-terminal sequence Cys-aliphatic-aliphatic-X. The alpha subunit is thought to participate in a stable complex with the substrate. The beta subunit binds the peptide substrate. Through RAC1 prenylation and activation may positively regulate neuromuscular junction development downstream of MUSK (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e3/3e37_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e37 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Farnesyltransferase|Farnesyltransferase]]
+
*[[Farnesyltransferase 3D structures|Farnesyltransferase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:019246009</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Protein farnesyltransferase]]
+
[[Category: Large Structures]]
-
[[Category: Beese, L S.]]
+
[[Category: Beese LS]]
-
[[Category: Hast, M A.]]
+
[[Category: Hast MA]]
-
[[Category: Ethylenediamine]]
+
-
[[Category: Falciparum]]
+
-
[[Category: Farnesyltransferase]]
+
-
[[Category: Ftase]]
+
-
[[Category: Malaria]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Phosphoprotein]]
+
-
[[Category: Plasmodium]]
+
-
[[Category: Prenyltransferase]]
+
-
[[Category: Protein farnesyltransferase]]
+
-
[[Category: Transferase]]
+

Current revision

Protein farnesyltransferase complexed with bisubstrate ethylenediamine scaffold inhibitor 5

PDB ID 3e37

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools