This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3axm
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3axm.png|left|200px]] | ||
| - | + | ==Structure of rice Rubisco in complex with 6PG== | |
| - | + | <StructureSection load='3axm' size='340' side='right'caption='[[3axm]], [[Resolution|resolution]] 1.65Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3axm]] is a 16 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AXM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AXM FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6PG:6-PHOSPHOGLUCONIC+ACID'>6PG</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NME:METHYLAMINE'>NME</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3axm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3axm OCA], [https://pdbe.org/3axm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3axm RCSB], [https://www.ebi.ac.uk/pdbsum/3axm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3axm ProSAT]</span></td></tr> |
| - | [[3axm]] is a 16 chain structure with sequence from [ | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/RBL_ORYSJ RBL_ORYSJ] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | ||
==See Also== | ==See Also== | ||
| - | *[[RuBisCO|RuBisCO]] | + | *[[RuBisCO 3D structures|RuBisCO 3D structures]] |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| - | [[Category: | + | [[Category: Oryza sativa Japonica Group]] |
| - | [[Category: | + | [[Category: Inoue T]] |
| - | [[Category: Inoue | + | [[Category: Ishida H]] |
| - | [[Category: Ishida | + | [[Category: Kai Y]] |
| - | [[Category: Kai | + | [[Category: Kogami A]] |
| - | [[Category: Kogami | + | [[Category: Mae T]] |
| - | [[Category: Mae | + | [[Category: Makino A]] |
| - | [[Category: Makino | + | [[Category: Matsumura H]] |
| - | [[Category: Matsumura | + | [[Category: Mizohata E]] |
| - | [[Category: Mizohata | + | [[Category: Ueno T]] |
| - | [[Category: Ueno | + | [[Category: Yokota A]] |
| - | [[Category: Yokota | + | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of rice Rubisco in complex with 6PG
| |||||||||||
Categories: Large Structures | Oryza sativa Japonica Group | Inoue T | Ishida H | Kai Y | Kogami A | Mae T | Makino A | Matsumura H | Mizohata E | Ueno T | Yokota A
