This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1rvg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:26, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1rvg.png|left|200px]]
 
-
{{STRUCTURE_1rvg| PDB=1rvg | SCENE= }}
+
==crystal structure of class II fructose-bisphosphate aldolase from Thermus aquaticus in complex with Y==
-
 
+
<StructureSection load='1rvg' size='340' side='right'caption='[[1rvg]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===crystal strcuture of class II fructose-bisphosphate aldolase from Thermus aquaticus in complex with Y===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1rvg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RVG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RVG FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_14699122}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=YT3:YTTRIUM+(III)+ION'>YT3</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rvg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rvg OCA], [https://pdbe.org/1rvg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rvg RCSB], [https://www.ebi.ac.uk/pdbsum/1rvg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rvg ProSAT]</span></td></tr>
-
[[1rvg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RVG OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9RHA2_THEAQ Q9RHA2_THEAQ]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rv/1rvg_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rvg ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Aldolase|Aldolase]]
+
*[[Aldolase 3D structures|Aldolase 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:014699122</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Fructose-bisphosphate aldolase]]
+
[[Category: Thermus aquaticus]]
[[Category: Thermus aquaticus]]
-
[[Category: Izard, T.]]
+
[[Category: Izard T]]
-
[[Category: Sygusch, J.]]
+
[[Category: Sygusch J]]
-
[[Category: Class ii aldolase]]
+
-
[[Category: Lyase]]
+
-
[[Category: Metal-depdendent aldolase]]
+

Current revision

crystal structure of class II fructose-bisphosphate aldolase from Thermus aquaticus in complex with Y

PDB ID 1rvg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools