1tfr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:39, 14 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1tfr.png|left|200px]]
 
-
{{STRUCTURE_1tfr| PDB=1tfr | SCENE= }}
+
==RNASE H FROM BACTERIOPHAGE T4==
-
 
+
<StructureSection load='1tfr' size='340' side='right'caption='[[1tfr]], [[Resolution|resolution]] 2.06&Aring;' scene=''>
-
===RNASE H FROM BACTERIOPHAGE T4===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1tfr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TFR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1TFR FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_8674116}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.06&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1tfr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tfr OCA], [https://pdbe.org/1tfr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1tfr RCSB], [https://www.ebi.ac.uk/pdbsum/1tfr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1tfr ProSAT]</span></td></tr>
-
[[1tfr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_t4 Enterobacteria phage t4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1TFR OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RNH_BPT4 RNH_BPT4] 5' to 3' exonuclease that removes the pentamer RNA primers from DNA chains initiated by the T4 primase-helicase.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/tf/1tfr_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1tfr ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Ribonuclease|Ribonuclease]]
+
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:008674116</ref><references group="xtra"/>
+
[[Category: Escherichia virus T4]]
-
[[Category: Enterobacteria phage t4]]
+
[[Category: Large Structures]]
-
[[Category: Ribonuclease H]]
+
[[Category: Hyde CC]]
-
[[Category: Hyde, C C.]]
+
[[Category: Mueser TC]]
-
[[Category: Mueser, T C.]]
+
[[Category: Nossal NG]]
-
[[Category: Nossal, N G.]]
+
-
[[Category: 5u-3u exonuclease]]
+
-
[[Category: Dna:dna]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Magnesium-containing]]
+
-
[[Category: Metal-dependent]]
+
-
[[Category: Rna:rna]]
+

Current revision

RNASE H FROM BACTERIOPHAGE T4

PDB ID 1tfr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools