2w6y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:46, 13 December 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2w6y.png|left|200px]]
 
-
{{STRUCTURE_2w6y| PDB=2w6y | SCENE= }}
+
==Crystal structure of Sperm Whale Myoglobin mutant YQR in complex with Xenon==
-
 
+
<StructureSection load='2w6y' size='340' side='right'caption='[[2w6y]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF SPERM WHALE MYOGLOBIN MUTANT YQR IN COMPLEX WITH XENON===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[2w6y]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W6Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W6Y FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=XE:XENON'>XE</scene></td></tr>
-
[[2w6y]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Physeter_catodon Physeter catodon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W6Y OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w6y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w6y OCA], [https://pdbe.org/2w6y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w6y RCSB], [https://www.ebi.ac.uk/pdbsum/2w6y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w6y ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MYG_PHYMC MYG_PHYMC] Serves as a reserve supply of oxygen and facilitates the movement of oxygen within muscles.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/2w6y_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2w6y ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Hemoglobin|Hemoglobin]]
+
*[[Hemoglobin 3D structures|Hemoglobin 3D structures]]
-
*[[Myoglobin|Myoglobin]]
+
*[[Myoglobin 3D structures|Myoglobin 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Physeter catodon]]
[[Category: Physeter catodon]]
-
[[Category: Brunori, M.]]
+
[[Category: Brunori M]]
-
[[Category: Draghi, F.]]
+
[[Category: Draghi F]]
-
[[Category: Johnson, K A.]]
+
[[Category: Johnson KA]]
-
[[Category: Miele, A E.]]
+
[[Category: Miele AE]]
-
[[Category: Renzi, F.]]
+
[[Category: Renzi F]]
-
[[Category: Savino, C.]]
+
[[Category: Savino C]]
-
[[Category: Sciara, G.]]
+
[[Category: Sciara G]]
-
[[Category: Vallone, B.]]
+
[[Category: Vallone B]]
-
[[Category: Heme]]
+
-
[[Category: Hydrophobic cavity]]
+
-
[[Category: Iron]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Muscle protein]]
+
-
[[Category: Oxygen storage]]
+
-
[[Category: Oxygen transport]]
+
-
[[Category: Transport]]
+
-
[[Category: Xenon docking site]]
+

Current revision

Crystal structure of Sperm Whale Myoglobin mutant YQR in complex with Xenon

PDB ID 2w6y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools