3i9m

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[[Image:3i9m.png|left|200px]]
 
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{{STRUCTURE_3i9m| PDB=3i9m | SCENE= }}
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==Crystal structure of human CD38 complexed with an analog ara-2'F-ADPR==
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<StructureSection load='3i9m' size='340' side='right'caption='[[3i9m]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3i9m]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I9M FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AVU:[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL+[(2R,3R,4R)-4-FLUORO-3-HYDROXYTETRAHYDROFURAN-2-YL]METHYL+DIHYDROGEN+DIPHOSPHATE'>AVU</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i9m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i9m OCA], [https://pdbe.org/3i9m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i9m RCSB], [https://www.ebi.ac.uk/pdbsum/3i9m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i9m ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CD38_HUMAN CD38_HUMAN] Synthesizes cyclic ADP-ribose, a second messenger for glucose-induced insulin secretion. Also has cADPr hydrolase activity. Also moonlights as a receptor in cells of the immune system.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i9/3i9m_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i9m ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cyclic ADP-ribose (cADPR) is a universal calcium messenger molecule that regulates many physiological processes. The production and degradation of cADPR are catalyzed by a family of related enzymes, including the ADP-ribosyl cyclase from Aplysia california (ADPRAC) and CD38 from human. Although ADPRC and CD38 share a common evolutionary ancestor, their enzymatic functions toward NAD and cADPR homeostasis have evolved divergently. Thus, ADPRC can only generate cADPR from NAD (cyclase), whereas CD38, in contrast, has multiple activities, i.e. in cADPR production and degradation, as well as NAD hydrolysis (NADase). In this study, we determined a number of ADPRC and CD38 structures bound with various nucleotides. From these complexes, we elucidated the structural features required for the cyclization (cyclase) reaction of ADPRC and the NADase reaction of CD38. Using the structural approach in combination with site-directed mutagenesis, we identified Phe-174 in ADPRC as a critical residue in directing the folding of the substrate during the cyclization reaction. Thus, a point mutation of Phe-174 to glycine can turn ADPRC from a cyclase toward an NADase. The equivalent residue in CD38, Thr-221, is shown to disfavor the cyclizing folding of the substrate, resulting in NADase being the dominant activity. The comprehensive structural comparison of CD38 and APDRC presented in this study thus provides insights into the structural determinants for the functional evolution from a cyclase to a hydrolase.
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===Crystal structure of human CD38 complexed with an analog ara-2'F-ADPR===
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Structural basis for enzymatic evolution from a dedicated ADP-ribosyl cyclase to a multifunctional NAD hydrolase.,Liu Q, Graeff R, Kriksunov IA, Jiang H, Zhang B, Oppenheimer N, Lin H, Potter BV, Lee HC, Hao Q J Biol Chem. 2009 Oct 2;284(40):27637-45. Epub 2009 Jul 28. PMID:19640846<ref>PMID:19640846</ref>
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{{ABSTRACT_PUBMED_19640846}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 3i9m" style="background-color:#fffaf0;"></div>
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[[3i9m]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I9M OCA].
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==See Also==
==See Also==
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*[[Cluster of Differentiation 38|Cluster of Differentiation 38]]
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*[[Cluster of Differentiation CD38|Cluster of Differentiation CD38]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:019640846</ref><references group="xtra"/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Graeff, R.]]
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[[Category: Large Structures]]
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[[Category: Hao, Q.]]
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[[Category: Graeff R]]
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[[Category: Jiang, H.]]
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[[Category: Hao Q]]
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[[Category: Kriksunov, I A.]]
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[[Category: Jiang H]]
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[[Category: Lee, H C.]]
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[[Category: Kriksunov IA]]
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[[Category: Lin, H.]]
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[[Category: Lee HC]]
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[[Category: Liu, Q.]]
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[[Category: Lin H]]
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[[Category: Oppenheimer, N.]]
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[[Category: Liu Q]]
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[[Category: Potter, B V.L.]]
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[[Category: Oppenheimer N]]
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[[Category: Zhang, B.]]
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[[Category: Potter BVL]]
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[[Category: Alpha helices rich domain and alpha/beta domain]]
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[[Category: Zhang B]]
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[[Category: Covalent reaction intermediate]]
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[[Category: Diabetes mellitus]]
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[[Category: Disulfide bond]]
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[[Category: Enzyme-analog complex]]
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[[Category: Glycoprotein]]
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[[Category: Hydrolase]]
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[[Category: Membrane]]
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[[Category: Nad]]
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[[Category: Receptor]]
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[[Category: Signal-anchor]]
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[[Category: Transmembrane]]
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Current revision

Crystal structure of human CD38 complexed with an analog ara-2'F-ADPR

PDB ID 3i9m

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