This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1i5t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:44, 3 April 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1i5t.png|left|200px]]
 
-
{{STRUCTURE_1i5t| PDB=1i5t | SCENE= }}
+
==SOLUTION STRUCTURE OF CYANOFERRICYTOCHROME C==
-
 
+
<StructureSection load='1i5t' size='340' side='right'caption='[[1i5t]]' scene=''>
-
===SOLUTION STRUCTURE OF CYANOFERRICYTOCHROME C===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1i5t]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I5T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1I5T FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_11941512}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1i5t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1i5t OCA], [https://pdbe.org/1i5t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1i5t RCSB], [https://www.ebi.ac.uk/pdbsum/1i5t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1i5t ProSAT]</span></td></tr>
-
[[1i5t]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1I5T OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CYC_HORSE CYC_HORSE] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. Plays a role in apoptosis. Suppression of the anti-apoptotic members or activation of the pro-apoptotic members of the Bcl-2 family leads to altered mitochondrial membrane permeability resulting in release of cytochrome c into the cytosol. Binding of cytochrome c to Apaf-1 triggers the activation of caspase-9, which then accelerates apoptosis by activating other caspases (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/1i5t_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1i5t ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cytochrome c|Cytochrome c]]
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:011941512</ref><references group="xtra"/>
+
[[Category: Equus caballus]]
[[Category: Equus caballus]]
-
[[Category: Qian, C.]]
+
[[Category: Large Structures]]
-
[[Category: Tang, W.]]
+
[[Category: Qian C]]
-
[[Category: Wang, J.]]
+
[[Category: Tang W]]
-
[[Category: Yao, Y.]]
+
[[Category: Wang J]]
-
[[Category: Ye, K.]]
+
[[Category: Yao Y]]
-
[[Category: Conformational transition]]
+
[[Category: Ye K]]
-
[[Category: Cyanide]]
+
-
[[Category: Cytochrome c]]
+
-
[[Category: Electron transport]]
+

Current revision

SOLUTION STRUCTURE OF CYANOFERRICYTOCHROME C

PDB ID 1i5t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools