2woa

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[[Image:2woa.png|left|200px]]
 
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{{STRUCTURE_2woa| PDB=2woa | SCENE= }}
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==MMP12 complex with a beta hydroxy carboxylic acid==
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<StructureSection load='2woa' size='340' side='right'caption='[[2woa]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2woa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WOA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WOA FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=023:N^2^-[(2R)-2-{(1S)-1-[FORMYL(HYDROXY)AMINO]ETHYL}-5-PHENYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE'>023</scene>, <scene name='pdbligand=576:(3S)-5-(9H-FLUOREN-2-YL)-3-HYDROXYPENTANOIC+ACID'>576</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2woa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2woa OCA], [https://pdbe.org/2woa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2woa RCSB], [https://www.ebi.ac.uk/pdbsum/2woa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2woa ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MMP12_HUMAN MMP12_HUMAN] May be involved in tissue injury and remodeling. Has significant elastolytic activity. Can accept large and small amino acids at the P1' site, but has a preference for leucine. Aromatic or hydrophobic residues are preferred at the P1 site, with small hydrophobic residues (preferably alanine) occupying P3.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wo/2woa_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2woa ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A new class of selective MMP-12 inhibitors have been identified via high throughput screening. Crystallization with MMP-12 confirmed the mode of binding and allowed initial optimization to be carried out using classical structure based design.
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===MMP12 COMPLEX WITH A BETA HYDROXY CARBOXYLIC ACID===
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The identification of beta-hydroxy carboxylic acids as selective MMP-12 inhibitors.,Holmes IP, Gaines S, Watson SP, Lorthioir O, Walker A, Baddeley SJ, Herbert S, Egan D, Convery MA, Singh OM, Gross JW, Strelow JM, Smith RH, Amour AJ, Brown D, Martin SL Bioorg Med Chem Lett. 2009 Oct 1;19(19):5760-3. Epub 2009 Aug 6. PMID:19703773<ref>PMID:19703773</ref>
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{{ABSTRACT_PUBMED_19703773}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 2woa" style="background-color:#fffaf0;"></div>
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[[2woa]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WOA OCA].
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==See Also==
==See Also==
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*[[Elastase|Elastase]]
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*[[Matrix metalloproteinase 3D structures|Matrix metalloproteinase 3D structures]]
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*[[Matrix metalloproteinase|Matrix metalloproteinase]]
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:019703773</ref><references group="xtra"/>
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Macrophage elastase]]
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[[Category: Large Structures]]
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[[Category: Amour, A J.]]
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[[Category: Amour AJ]]
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[[Category: Baddeley, S J.]]
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[[Category: Baddeley SJ]]
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[[Category: Brown, D.]]
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[[Category: Brown D]]
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[[Category: Convery, M A.]]
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[[Category: Convery MA]]
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[[Category: Egan, D.]]
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[[Category: Egan D]]
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[[Category: Gaines, S.]]
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[[Category: Gaines S]]
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[[Category: Gross, J W.]]
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[[Category: Gross JW]]
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[[Category: Herbert, S.]]
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[[Category: Herbert S]]
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[[Category: Holmes, I P.]]
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[[Category: Holmes IP]]
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[[Category: Lorthioir, O.]]
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[[Category: Lorthioir O]]
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[[Category: Martin, S L.]]
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[[Category: Martin SL]]
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[[Category: Singh, O M.P.]]
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[[Category: Singh OMP]]
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[[Category: Smith, R H.]]
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[[Category: Smith RH]]
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[[Category: Strelow, J M.]]
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[[Category: Strelow JM]]
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[[Category: Walker, A.]]
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[[Category: Walker A]]
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[[Category: Watson, S P.]]
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[[Category: Watson SP]]
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[[Category: Disulfide bond]]
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[[Category: Extracellular matrix]]
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[[Category: Glycoprotein]]
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[[Category: Hydrolase]]
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[[Category: Matrix metalloprotease mmp-12 complex structure]]
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[[Category: Metal-binding]]
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[[Category: Metalloprotease]]
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[[Category: Protease]]
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[[Category: Secreted]]
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[[Category: Zymogen]]
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Current revision

MMP12 complex with a beta hydroxy carboxylic acid

PDB ID 2woa

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