This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3iep
From Proteopedia
(Difference between revisions)
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3iep.png|left|200px]] | ||
| - | + | ==Firefly luciferase apo structure (P41 form)== | |
| - | + | <StructureSection load='3iep' size='340' side='right'caption='[[3iep]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3iep]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Photinus_pyralis Photinus pyralis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IEP FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iep OCA], [https://pdbe.org/3iep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iep RCSB], [https://www.ebi.ac.uk/pdbsum/3iep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iep ProSAT]</span></td></tr> | |
| - | == | + | </table> |
| - | [[3iep]] is a 1 chain structure with sequence from [ | + | == Function == |
| + | [https://www.uniprot.org/uniprot/LUCI_PHOPY LUCI_PHOPY] Produces green light with a wavelength of 562 nm. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ie/3iep_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iep ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
*[[Luciferase|Luciferase]] | *[[Luciferase|Luciferase]] | ||
| - | + | *[[Luciferase 3D structures|Luciferase 3D structures]] | |
| - | + | __TOC__ | |
| - | < | + | </StructureSection> |
| + | [[Category: Large Structures]] | ||
[[Category: Photinus pyralis]] | [[Category: Photinus pyralis]] | ||
| - | [[Category: Auld | + | [[Category: Auld DS]] |
| - | [[Category: Battaile | + | [[Category: Battaile KP]] |
| - | [[Category: Hanzlik | + | [[Category: Hanzlik RP]] |
| - | [[Category: Inglese | + | [[Category: Inglese J]] |
| - | [[Category: Lea | + | [[Category: Lea WA]] |
| - | [[Category: Lovell | + | [[Category: Lovell S]] |
| - | [[Category: Maloney | + | [[Category: Maloney DJ]] |
| - | [[Category: Raj | + | [[Category: Raj G]] |
| - | [[Category: Shen | + | [[Category: Shen M]] |
| - | [[Category: Simeonov | + | [[Category: Simeonov A]] |
| - | [[Category: Thomas | + | [[Category: Thomas CJ]] |
| - | [[Category: Thorne | + | [[Category: Thorne N]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Firefly luciferase apo structure (P41 form)
| |||||||||||
Categories: Large Structures | Photinus pyralis | Auld DS | Battaile KP | Hanzlik RP | Inglese J | Lea WA | Lovell S | Maloney DJ | Raj G | Shen M | Simeonov A | Thomas CJ | Thorne N

