This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ol2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:17, 21 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3ol2.png|left|200px]]
 
-
{{STRUCTURE_3ol2| PDB=3ol2 | SCENE= }}
+
==Receptor-ligand structure of Human Semaphorin 4D with Plexin B1.==
-
 
+
<StructureSection load='3ol2' size='340' side='right'caption='[[3ol2]], [[Resolution|resolution]] 2.99&Aring;' scene=''>
-
===Receptor-ligand structure of Human Semaphorin 4D with Plexin B1.===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3ol2]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OL2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OL2 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_20877282}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.99&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ol2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ol2 OCA], [https://pdbe.org/3ol2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ol2 RCSB], [https://www.ebi.ac.uk/pdbsum/3ol2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ol2 ProSAT]</span></td></tr>
-
[[3ol2]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OL2 OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SEM4D_HUMAN SEM4D_HUMAN] Cell surface receptor for PLXN1B and PLXNB2 that plays an important role in cell-cell signaling. Promotes reorganization of the actin cytoskeleton and plays a role in axonal growth cone guidance in the developing central nervous system. Regulates dendrite and axon branching and morphogenesis. Promotes the migration of cerebellar granule cells and of endothelial cells. Plays a role in the immune system; induces B-cells to aggregate and improves their viability (in vitro). Promotes signaling via SRC and PTK2B/PYK2, which then mediates activation of phosphatidylinositol 3-kinase and of the AKT1 signaling cascade. Interaction with PLXNB1 mediates activation of RHOA.<ref>PMID:16055703</ref> <ref>PMID:19788569</ref> <ref>PMID:20877282</ref> <ref>PMID:8876214</ref>
==See Also==
==See Also==
-
*[[Plexin|Plexin]]
+
*[[Plexin 3D structures|Plexin 3D structures]]
-
*[[Semaphorin|Semaphorin]]
+
*[[Semaphorin 3D structures|Semaphorin 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:020877282</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Bell, C H.]]
+
[[Category: Large Structures]]
-
[[Category: Janssen, B J.C.]]
+
[[Category: Bell CH]]
-
[[Category: Jones, E Y.]]
+
[[Category: Janssen BJC]]
-
[[Category: Mitchell, C J.]]
+
[[Category: Jones EY]]
-
[[Category: Perez-Branguli , F.]]
+
[[Category: Mitchell CJ]]
-
[[Category: Robinson, R A.]]
+
[[Category: Perez-Branguli F]]
-
[[Category: Siebold, C.]]
+
[[Category: Robinson RA]]
-
[[Category: Beta-propeller]]
+
[[Category: Siebold C]]
-
[[Category: Extacellular]]
+
-
[[Category: Signaling protein]]
+
-
[[Category: Signalling]]
+

Current revision

Receptor-ligand structure of Human Semaphorin 4D with Plexin B1.

PDB ID 3ol2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools