This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1wl8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1wl8" [edit=sysop:move=sysop])
Current revision (07:56, 25 October 2023) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1wl8.png|left|200px]]
 
-
{{STRUCTURE_1wl8| PDB=1wl8 | SCENE= }}
+
==Crystal structure of PH1346 protein from Pyrococcus horikoshii==
-
 
+
<StructureSection load='1wl8' size='340' side='right'caption='[[1wl8]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
-
===Crystal structure of PH1346 protein from Pyrococcus horikoshii===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1wl8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WL8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WL8 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CSO:S-HYDROXYCYSTEINE'>CSO</scene>, <scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene></td></tr>
-
[[1wl8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WL8 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wl8 OCA], [https://pdbe.org/1wl8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wl8 RCSB], [https://www.ebi.ac.uk/pdbsum/1wl8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wl8 ProSAT], [https://www.topsan.org/Proteins/RSGI/1wl8 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GUAAA_PYRHO GUAAA_PYRHO] Catalyzes the synthesis of GMP from XMP (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wl/1wl8_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wl8 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
*[[GMP synthase|GMP synthase]]
*[[GMP synthase|GMP synthase]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
-
[[Category: Kunishima, N.]]
+
[[Category: Kunishima N]]
-
[[Category: Lokanath, N K.]]
+
[[Category: Lokanath NK]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
-
[[Category: Gatase]]
+
-
[[Category: Ligase]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of PH1346 protein from Pyrococcus horikoshii

PDB ID 1wl8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools