1a4m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:46, 2 August 2023) (edit) (undo)
 
(19 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1a4m.gif|left|200px]]<br />
 
-
<applet load="1a4m" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1a4m, resolution 1.95&Aring;" />
 
-
'''ADA STRUCTURE COMPLEXED WITH PURINE RIBOSIDE AT PH 7.0'''<br />
 
-
==Overview==
+
==ADA STRUCTURE COMPLEXED WITH PURINE RIBOSIDE AT PH 7.0==
-
Adenosine deaminase, which catalyzes the irreversible hydrolytic, deamination of adenosine nucleosides to inosine nucleosides and ammonia, is a key enzyme in purine metabolism and lymphoid development. The X-ray, structures of murine adenosine deaminase with bound potent inhibitors (Ki, values approximately 10(-13) M) (8R)-hydroxyl-2'-deoxycoformycin, (pentostatin), a transition state analogue, and, (6S)-hydroxyl-1,6-dihydropurine riboside, a reaction coordinate analogue, have been determined and refined to resolutions of 2.6 and 1.95 A, respectively. Crystals of both complexes were obtained at pH 7, where the, enzyme is fully active, in an identical space group with the asymmetric, unit containing four molecules. In addition to the very high degree of, similarity between the four ... [[http://ispc.weizmann.ac.il/pmbin/getpm?9622483 (full description)]]
+
<StructureSection load='1a4m' size='340' side='right'caption='[[1a4m]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1a4m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A4M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A4M FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PRH:6-HYDROXY-1,6-DIHYDRO+PURINE+NUCLEOSIDE'>PRH</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a4m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a4m OCA], [https://pdbe.org/1a4m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a4m RCSB], [https://www.ebi.ac.uk/pdbsum/1a4m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a4m ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ADA_MOUSE ADA_MOUSE] Catalyzes the hydrolytic deamination of adenosine and 2-deoxyadenosine. Plays an important role in purine metabolism and in adenosine homeostasis. Modulates signaling by extracellular adenosine, and so contributes indirectly to cellular signaling events. Acts as a positive regulator of T-cell coactivation, by binding DPP4. Its interaction with DPP4 regulates lymphocyte-epithelial cell adhesion (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a4/1a4m_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1a4m ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Adenosine deaminase, which catalyzes the irreversible hydrolytic deamination of adenosine nucleosides to inosine nucleosides and ammonia, is a key enzyme in purine metabolism and lymphoid development. The X-ray structures of murine adenosine deaminase with bound potent inhibitors (Ki values approximately 10(-13) M) (8R)-hydroxyl-2'-deoxycoformycin (pentostatin), a transition state analogue, and (6S)-hydroxyl-1,6-dihydropurine riboside, a reaction coordinate analogue, have been determined and refined to resolutions of 2.6 and 1.95 A, respectively. Crystals of both complexes were obtained at pH 7, where the enzyme is fully active, in an identical space group with the asymmetric unit containing four molecules. In addition to the very high degree of similarity between the four independent molecules in each complex structure, there is also considerable structural similarity of the complex with the dihydropurine riboside with that of an identical complex previously determined at pH 4.2 where the enzyme is 20% active. The interactions between the enzyme and the two analogues are extremely similar. These include the coordination of the 8R- or 6S-hydroxyl group of the analogues to the Zn2+ which mainly contributes to the strong potency and very high degree of stereospecificity of inhibition by these analogues. The interactions are further indicative of the structural and chemical requirements of substrates. These structures and recent site-directed mutagenesis have further shed light on the catalytic mechanism of the enzyme.
-
==About this Structure==
+
Complexes of adenosine deaminase with two potent inhibitors: X-ray structures in four independent molecules at pH of maximum activity.,Wang Z, Quiocho FA Biochemistry. 1998 Jun 9;37(23):8314-24. PMID:9622483<ref>PMID:9622483</ref>
-
1A4M is a [[http://en.wikipedia.org/wiki/Single_protein Single protein]] structure of sequence from [[http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]] with ZN and PRH as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/Adenosine_deaminase Adenosine deaminase]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.4.4 3.5.4.4]]. Structure known Active Site: . Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1A4M OCA]].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Complexes of adenosine deaminase with two potent inhibitors: X-ray structures in four independent molecules at pH of maximum activity., Wang Z, Quiocho FA, Biochemistry. 1998 Jun 9;37(23):8314-24. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9622483 9622483]
+
</div>
-
[[Category: Adenosine deaminase]]
+
<div class="pdbe-citations 1a4m" style="background-color:#fffaf0;"></div>
-
[[Category: Mus musculus]]
+
-
[[Category: Single protein]]
+
-
[[Category: Quiocho, F.A.]]
+
-
[[Category: Wang, Z.]]
+
-
[[Category: PRH]]
+
-
[[Category: ZN]]
+
-
[[Category: adenosine deaminase]]
+
-
[[Category: hydrolase]]
+
-
[[Category: purine riboside]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 14:44:53 2007''
+
==See Also==
 +
*[[Adenosine deaminase 3D structures|Adenosine deaminase 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Mus musculus]]
 +
[[Category: Quiocho FA]]
 +
[[Category: Wang Z]]

Current revision

ADA STRUCTURE COMPLEXED WITH PURINE RIBOSIDE AT PH 7.0

PDB ID 1a4m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools