This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3pat
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3pat.png|left|200px]] | ||
| - | + | ==COMPARISON BETWEEN THE CRYSTAL AND THE SOLUTION STRUCTURES OF THE EF HAND PARVALBUMIN== | |
| - | + | <StructureSection load='3pat' size='340' side='right'caption='[[3pat]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3pat]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Esolu Esolu]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PAT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PAT FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | |
| - | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pat FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pat OCA], [https://pdbe.org/3pat PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pat RCSB], [https://www.ebi.ac.uk/pdbsum/3pat PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pat ProSAT]</span></td></tr> |
| - | [[3pat]] is a 1 chain structure with sequence from [ | + | </table> |
| + | == Function == | ||
| + | [[https://www.uniprot.org/uniprot/PRVA_ESOLU PRVA_ESOLU]] In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pa/3pat_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3pat ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
*[[Parvalbumin|Parvalbumin]] | *[[Parvalbumin|Parvalbumin]] | ||
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Esolu]] | |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Baldellon, C | + | [[Category: Baldellon, C]] |
| - | [[Category: Cave, A | + | [[Category: Cave, A]] |
| - | [[Category: Etienne, G | + | [[Category: Etienne, G]] |
| - | [[Category: Padilla, A | + | [[Category: Padilla, A]] |
| - | [[Category: Parello, J | + | [[Category: Parello, J]] |
Current revision
COMPARISON BETWEEN THE CRYSTAL AND THE SOLUTION STRUCTURES OF THE EF HAND PARVALBUMIN
| |||||||||||
Categories: Esolu | Large Structures | Baldellon, C | Cave, A | Etienne, G | Padilla, A | Parello, J
