3nep

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[[Image:3nep.png|left|200px]]
 
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{{STRUCTURE_3nep| PDB=3nep | SCENE= }}
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==1.55A resolution structure of malate dehydrogenase from Salinibacter ruber==
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<StructureSection load='3nep' size='340' side='right'caption='[[3nep]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3nep]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Salinibacter_ruber_DSM_13855 Salinibacter ruber DSM 13855]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NEP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NEP FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.551&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nep FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nep OCA], [https://pdbe.org/3nep PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nep RCSB], [https://www.ebi.ac.uk/pdbsum/3nep PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nep ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MDH_SALRD MDH_SALRD] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_00487]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Several experimental techniques were applied to unravel fine molecular details of protein adaptation to high salinity. We compared four homologous enzymes, which suggested a new halo-adaptive state in the process of molecular adaptation to high-salt conditions. Together with comparative functional studies, the structure of malate dehydrogenase from the eubacterium Salinibacter ruber shows that the enzyme shares characteristics of a halo-adapted archaea-bacterial enzyme and of non-halo-adapted enzymes from other eubacterial species. The S. ruber enzyme is active at the high physiological concentrations of KCl but, unlike typical halo-adapted enzymes, remains folded and active at low salt concentrations. Structural aspects of the protein, including acidic residues at the surface, solvent-exposed hydrophobic surface, and buried hydrophobic surface, place it between the typical halo-adapted and non-halo-adapted proteins. The enzyme lacks inter-subunit ion-binding sites often seen in halo-adapted enzymes. These observations permit us to suggest an evolutionary pathway that is highlighted by subtle trade-offs to achieve an optimal compromise among solubility, stability, and catalytic activity.
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===1.55A resolution structure of malate dehydrogenase from Salinibacter ruber===
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Gradual Adaptive Changes of a Protein Facing High Salt Concentrations.,Coquelle N, Talon R, Juers DH, Girard E, Kahn R, Madern D J Mol Biol. 2010 Oct 1. PMID:20888835<ref>PMID:20888835</ref>
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{{ABSTRACT_PUBMED_20888835}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 3nep" style="background-color:#fffaf0;"></div>
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[[3nep]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Salinibacter_ruber Salinibacter ruber]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NEP OCA].
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==See Also==
==See Also==
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*[[Johnson sandbox 1|Johnson sandbox 1]]
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*[[Malate Dehydrogenase 3D structures|Malate Dehydrogenase 3D structures]]
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*[[Malate dehydrogenase|Malate dehydrogenase]]
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== References ==
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<references/>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:020888835</ref><references group="xtra"/>
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</StructureSection>
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[[Category: Malate dehydrogenase]]
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[[Category: Large Structures]]
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[[Category: Salinibacter ruber]]
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[[Category: Salinibacter ruber DSM 13855]]
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[[Category: Coquelle, N.]]
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[[Category: Coquelle N]]
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[[Category: Madern, D.]]
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[[Category: Madern D]]
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[[Category: Halophile]]
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[[Category: Malate dehydrogenase]]
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[[Category: Molecular adpatation]]
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[[Category: Nad]]
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[[Category: Oxidoreductase]]
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[[Category: Tricarboxylic acid cycle]]
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Current revision

1.55A resolution structure of malate dehydrogenase from Salinibacter ruber

PDB ID 3nep

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