3bhf

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[[Image:3bhf.png|left|200px]]
 
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{{STRUCTURE_3bhf| PDB=3bhf | SCENE= }}
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==Crystal structure of R49K mutant of Monomeric Sarcosine Oxidase crystallized in PEG as precipitant==
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<StructureSection load='3bhf' size='340' side='right'caption='[[3bhf]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[3bhf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._(in:_Bacteria) Bacillus sp. (in: Bacteria)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BHF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BHF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bhf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bhf OCA], [https://pdbe.org/3bhf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bhf RCSB], [https://www.ebi.ac.uk/pdbsum/3bhf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bhf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MSOX_BACB0 MSOX_BACB0] Catalyzes the oxidative demethylation of sarcosine. Can also oxidize other secondary amino acids such as N-methyl-L-alanine.[HAMAP-Rule:MF_00516]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bh/3bhf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bhf ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Monomeric sarcosine oxidase (MSOX) contains covalently bound FAD and catalyzes the oxidative demethylation of sarcosine ( N-methylglycine). The side chain of Arg49 is in van der Waals contact with the si face of the flavin ring; sarcosine binds just above the re face. Covalent flavin attachment requires a basic residue (Arg or Lys) at position 49. Although flavinylation is scarcely affected, mutation of Arg49 to Lys causes a 40-fold decrease in k cat and a 150-fold decrease in k cat/ K m sarcosine. The overall structure of the Arg49Lys mutant is very similar to wild-type MSOX; the side chain of Lys49 in the mutant is nearly congruent to that of Arg49 in the wild-type enzyme. The Arg49Lys mutant exhibits several features consistent with a less electropositive active site: (1) Charge transfer bands observed for mutant enzyme complexes with competitive inhibitors absorb at higher energy than the corresponding wild-type complexes. (2) The p K a for ionization at N(3)H of FAD is more than two pH units higher in the mutant than in wild-type MSOX. (3) The reduction potential of the oxidized/radical couple in the mutant is 100 mV lower than in the wild-type enzyme. The lower reduction potential is likely to be a major cause of the reduced catalytic activity of the mutant. Electrostatic interactions with Arg49 play an important role in catalysis and covalent flavinylation. A context-sensitive model for the electrostatic impact of an arginine to lysine mutation can account for the dramatically different consequences of the Arg49Lys mutation on MSOX catalysis and holoenzyme biosysnthesis.
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===Crystal structure of R49K mutant of Monomeric Sarcosine Oxidase crystallized in PEG as precipitant===
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Arginine 49 Is a Bifunctional Residue Important in Catalysis and Biosynthesis of Monomeric Sarcosine Oxidase: A Context-Sensitive Model for the Electrostatic Impact of Arginine to Lysine Mutations(,).,Hassan-Abdallah A, Zhao G, Chen ZW, Mathews FS, Schuman Jorns M Biochemistry. 2008 Feb 6;. PMID:18251505<ref>PMID:18251505</ref>
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{{ABSTRACT_PUBMED_18251505}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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==About this Structure==
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<div class="pdbe-citations 3bhf" style="background-color:#fffaf0;"></div>
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[[3bhf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BHF OCA].
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==See Also==
==See Also==
*[[Sarcosine oxidase|Sarcosine oxidase]]
*[[Sarcosine oxidase|Sarcosine oxidase]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:018251505</ref><ref group="xtra">PMID:010368302</ref><references group="xtra"/>
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__TOC__
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[[Category: Bacillus sp.]]
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</StructureSection>
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[[Category: Sarcosine oxidase]]
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[[Category: Large Structures]]
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[[Category: Chen, Z.]]
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[[Category: Chen Z]]
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[[Category: Hassan-Abdallah, A.]]
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[[Category: Hassan-Abdallah A]]
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[[Category: Jorns, M S.]]
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[[Category: Jorns MS]]
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[[Category: Mathews, F S.]]
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[[Category: Mathews FS]]
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[[Category: Zhao, G.]]
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[[Category: Zhao G]]
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[[Category: Fad]]
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[[Category: Flavoprotein oxidase]]
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[[Category: Oxidoreductase]]
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Current revision

Crystal structure of R49K mutant of Monomeric Sarcosine Oxidase crystallized in PEG as precipitant

PDB ID 3bhf

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