This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1sdq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:15, 23 August 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1sdq.png|left|200px]]
 
-
{{STRUCTURE_1sdq| PDB=1sdq | SCENE= }}
+
==Structure of reduced-NO adduct of mesopone cytochrome c peroxidase==
-
 
+
<StructureSection load='1sdq' size='340' side='right'caption='[[1sdq]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
-
===Structure of reduced-NO adduct of mesopone cytochrome c peroxidase===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1sdq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SDQ FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.69&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMI:FE-(4-MESOPORPHYRINONE)-R-ISOMER'>FMI</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr>
-
[[1sdq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SDQ OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sdq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sdq OCA], [https://pdbe.org/1sdq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sdq RCSB], [https://www.ebi.ac.uk/pdbsum/1sdq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sdq ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/sd/1sdq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1sdq ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cytochrome c peroxidase|Cytochrome c peroxidase]]
+
*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
-
[[Category: Cytochrome-c peroxidase]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Bhaskar, B.]]
+
[[Category: Bhaskar B]]
-
[[Category: Cohem, M S.]]
+
[[Category: Cohem MS]]
-
[[Category: Farmer, P J.]]
+
[[Category: Farmer PJ]]
-
[[Category: Immoos, C E.]]
+
[[Category: Immoos CE]]
-
[[Category: Poulos, T L.]]
+
[[Category: Poulos TL]]
-
[[Category: Sulc, F.]]
+
[[Category: Sulc F]]
-
[[Category: 4-mesoporphyrinone]]
+
-
[[Category: Bifunctional catalyst]]
+
-
[[Category: Cytochrome c peroxidase]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Proximal loop]]
+
-
[[Category: Trp191 cation radical]]
+

Current revision

Structure of reduced-NO adduct of mesopone cytochrome c peroxidase

PDB ID 1sdq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools