2rdo

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[[Image:2rdo.png|left|200px]]
 
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{{STRUCTURE_2rdo| PDB=2rdo | SCENE= }}
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==50S subunit with EF-G(GDPNP) and RRF bound==
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<SX load='2rdo' size='340' side='right' viewer='molstar' caption='[[2rdo]], [[Resolution|resolution]] 9.10&Aring;' scene=''>
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===50S subunit with EF-G(GDPNP) and RRF bound===
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2rdo]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDO FirstGlance]. <br>
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{{ABSTRACT_PUBMED_17996252}}
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 9.1&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdo OCA], [https://pdbe.org/2rdo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdo RCSB], [https://www.ebi.ac.uk/pdbsum/2rdo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdo ProSAT]</span></td></tr>
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==About this Structure==
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</table>
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[[2rdo]] is a 33 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDO OCA].
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== Function ==
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[https://www.uniprot.org/uniprot/RL25_ECOLI RL25_ECOLI] This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Binds to the 5S rRNA independently of L5 and L18. Not required for binding of the 5S rRNA/L5/L18 subcomplex to 23S rRNA.[HAMAP-Rule:MF_01336]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdo_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdo ConSurf].
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<div style="clear:both"></div>
==See Also==
==See Also==
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*[[Elongation factor|Elongation factor]]
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*[[Elongation factor 3D structures|Elongation factor 3D structures]]
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*[[Ribosomal protein L1|Ribosomal protein L1]]
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*[[Ribosome 3D structures|Ribosome 3D structures]]
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*[[Ribosomal protein L11|Ribosomal protein L11]]
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*[[Ribosome recycling factor|Ribosome recycling factor]]
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*[[Ribosomal protein L13|Ribosomal protein L13]]
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__TOC__
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*[[Ribosomal protein L14|Ribosomal protein L14]]
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</SX>
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*[[Ribosomal protein L15|Ribosomal protein L15]]
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*[[Ribosomal protein L16|Ribosomal protein L16]]
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*[[Ribosomal protein L17|Ribosomal protein L17]]
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*[[Ribosomal protein L18|Ribosomal protein L18]]
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*[[Ribosomal protein L19|Ribosomal protein L19]]
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*[[Ribosomal protein L2|Ribosomal protein L2]]
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*[[Ribosomal protein L20|Ribosomal protein L20]]
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*[[Ribosomal protein L21|Ribosomal protein L21]]
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*[[Ribosomal protein L22|Ribosomal protein L22]]
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*[[Ribosomal protein L23|Ribosomal protein L23]]
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*[[Ribosomal protein L24|Ribosomal protein L24]]
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*[[Ribosomal protein L25|Ribosomal protein L25]]
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*[[Ribosomal protein L27|Ribosomal protein L27]]
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*[[Ribosomal protein L29|Ribosomal protein L29]]
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*[[Ribosomal protein L3|Ribosomal protein L3]]
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*[[Ribosomal protein L30|Ribosomal protein L30]]
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*[[Ribosomal protein L31|Ribosomal protein L31]]
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*[[Ribosomal protein L32|Ribosomal protein L32]]
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*[[Ribosomal protein L33|Ribosomal protein L33]]
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*[[Ribosomal protein L34|Ribosomal protein L34]]
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*[[Ribosomal protein L35|Ribosomal protein L35]]
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*[[Ribosomal protein L36|Ribosomal protein L36]]
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*[[Ribosomal protein L4|Ribosomal protein L4]]
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*[[Ribosomal protein L5|Ribosomal protein L5]]
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*[[Ribosomal protein L6|Ribosomal protein L6]]
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*[[Ribosomal protein L9|Ribosomal protein L9]]
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==Reference==
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<ref group="xtra">PMID:017996252</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Ehrenberg, M.]]
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[[Category: Large Structures]]
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[[Category: Frank, J.]]
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[[Category: Ehrenberg M]]
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[[Category: Gao, N.]]
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[[Category: Frank J]]
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[[Category: Zavialov, A V.]]
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[[Category: Gao N]]
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[[Category: 50s subunit]]
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[[Category: Zavialov AV]]
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[[Category: Antibiotic resistance]]
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[[Category: Cryo-em]]
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[[Category: Ef-g]]
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[[Category: Elongation factor g]]
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[[Category: Gdpnp]]
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[[Category: Gtp-binding]]
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[[Category: Metal-binding]]
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[[Category: Methylation]]
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[[Category: Nucleotide-binding]]
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[[Category: Phosphoprotein]]
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[[Category: Protein biosynthesis]]
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[[Category: Real-space refinement]]
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[[Category: Repressor]]
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[[Category: Ribonucleoprotein]]
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[[Category: Ribosomal protein]]
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[[Category: Ribosome]]
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[[Category: Ribosome recycling factor]]
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[[Category: Rna-binding]]
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[[Category: Rrf]]
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[[Category: Rrna-binding]]
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[[Category: Transcription]]
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[[Category: Transcription regulation]]
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[[Category: Transcription termination]]
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[[Category: Translation regulation]]
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[[Category: Trna-binding]]
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Current revision

50S subunit with EF-G(GDPNP) and RRF bound

2rdo, resolution 9.10Å

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