This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3d3a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:52, 2 February 2022) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3d3a.png|left|200px]]
 
-
{{STRUCTURE_3d3a| PDB=3d3a | SCENE= }}
+
==Crystal structure of a beta-galactosidase from Bacteroides thetaiotaomicron==
-
 
+
<StructureSection load='3d3a' size='340' side='right'caption='[[3d3a]]' scene=''>
-
===Crystal structure of a beta-galactosidase from Bacteroides thetaiotaomicron===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D3A FirstGlance]. <br>
-
 
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d3a OCA], [https://pdbe.org/3d3a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d3a RCSB], [https://www.ebi.ac.uk/pdbsum/3d3a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d3a ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3d3a TOPSAN]</span></td></tr>
-
==About this Structure==
+
</table>
-
[[3d3a]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron_vpi-5482 Bacteroides thetaiotaomicron vpi-5482]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D3A OCA].
+
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/3d3a_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d3a ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Galactosidase|Galactosidase]]
+
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
-
[[Category: Bacteroides thetaiotaomicron vpi-5482]]
+
__TOC__
-
[[Category: Burley, S K.]]
+
</StructureSection>
-
[[Category: Kumaran, D.]]
+
[[Category: Large Structures]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Burley SK]]
-
[[Category: Palani, K.]]
+
[[Category: Kumaran D]]
-
[[Category: Swaminathan, S.]]
+
[[Category: Palani K]]
-
[[Category: 11092f]]
+
[[Category: Swaminathan S]]
-
[[Category: Bacteroides thetaiotaomicron]]
+
-
[[Category: Beta-galactosidase]]
+
-
[[Category: Glycosidase]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative ii]]
+
-
[[Category: Psi ii]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal structure of a beta-galactosidase from Bacteroides thetaiotaomicron

PDB ID 3d3a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools