3a4y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:10, 1 November 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3a4y.png|left|200px]]
 
-
{{STRUCTURE_3a4y| PDB=3a4y | SCENE= }}
+
==Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8==
-
 
+
<StructureSection load='3a4y' size='340' side='right'caption='[[3a4y]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
===Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[3a4y]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2zdw 2zdw]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A4Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A4Y FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
[[3a4y]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=2zdw 2zdw]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A4Y OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a4y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a4y OCA], [https://pdbe.org/3a4y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a4y RCSB], [https://www.ebi.ac.uk/pdbsum/3a4y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a4y ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RNSE_THET8 RNSE_THET8] Has endoribonuclease activity towards 23S and 16S rRNA (in vitro).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a4/3a4y_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a4y ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Ribonuclease|Ribonuclease]]
+
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-
[[Category: Thermus thermophilus hb8]]
+
__TOC__
-
[[Category: Ishikawa, H.]]
+
</StructureSection>
-
[[Category: Kuramitsu, S.]]
+
[[Category: Large Structures]]
-
[[Category: Masui, R.]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Nakagawa, N.]]
+
[[Category: Ishikawa H]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Yokoyama, S.]]
+
[[Category: Masui R]]
-
[[Category: Endonuclease]]
+
[[Category: Nakagawa N]]
-
[[Category: Hydrolase]]
+
[[Category: Yokoyama S]]
-
[[Category: Metal-binding]]
+
-
[[Category: Metallo beta lactamase fold]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Nuclease]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rna-binding]]
+
-
[[Category: Rrna processing]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+

Current revision

Crystal Structure of H61A mutant TTHA0252 from Thermus thermophilus HB8

PDB ID 3a4y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools