This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1g7v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:23, 7 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1g7v.png|left|200px]]
 
-
{{STRUCTURE_1g7v| PDB=1g7v | SCENE= }}
+
==CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH THE MECHANISM-BASED INHIBITOR==
-
 
+
<StructureSection load='1g7v' size='340' side='right'caption='[[1g7v]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
===CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH THE MECHANISM-BASED INHIBITOR===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1g7v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G7V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G7V FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_11371194}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PAI:{[(2,2-DIHYDROXY-ETHYL)-(2,3,4,5-TETRAHYDROXY-6-PHOSPHONOOXY-HEXYL)-AMINO]-METHYL}-PHOSPHONIC+ACID'>PAI</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g7v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g7v OCA], [https://pdbe.org/1g7v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g7v RCSB], [https://www.ebi.ac.uk/pdbsum/1g7v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g7v ProSAT]</span></td></tr>
-
[[1g7v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G7V OCA].
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/KDSA_ECOLI KDSA_ECOLI] Synthesis of KDO 8-P which is required for lipid A maturation and cellular growth.[HAMAP-Rule:MF_00056]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g7/1g7v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g7v ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Aldolase|Aldolase]]
+
*[[Kdo-8-phosphate synthase|Kdo-8-phosphate synthase]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:011371194</ref><references group="xtra"/>
+
-
[[Category: 3-deoxy-8-phosphooctulonate synthase]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Adir, N.]]
+
[[Category: Large Structures]]
-
[[Category: Asojo, O A.]]
+
[[Category: Adir N]]
-
[[Category: Baasov, T.]]
+
[[Category: Asojo OA]]
-
[[Category: Belakhov, V.]]
+
[[Category: Baasov T]]
-
[[Category: Friedman, J M.]]
+
[[Category: Belakhov V]]
-
[[Category: Shoham, Y.]]
+
[[Category: Friedman JM]]
-
[[Category: Beta-alpha-barrel]]
+
[[Category: Shoham Y]]
-
[[Category: Lipopolysaccharide]]
+
-
[[Category: Lyase]]
+

Current revision

CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH THE MECHANISM-BASED INHIBITOR

PDB ID 1g7v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools