1k68

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:05, 26 March 2025) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1k68.png|left|200px]]
 
-
{{STRUCTURE_1k68| PDB=1k68 | SCENE= }}
+
==Crystal Structure of the Phosphorylated Cyanobacterial Phytochrome Response Regulator RcpA==
 +
<StructureSection load='1k68' size='340' side='right'caption='[[1k68]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1k68]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Tolypothrix_sp._PCC_7601 Tolypothrix sp. PCC 7601]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K68 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1K68 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PHD:ASPARTYL+PHOSPHATE'>PHD</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1k68 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1k68 OCA], [https://pdbe.org/1k68 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1k68 RCSB], [https://www.ebi.ac.uk/pdbsum/1k68 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1k68 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8RTN0_9CYAN Q8RTN0_9CYAN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/k6/1k68_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1k68 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The structures of two response regulators (RRs) from the cyanobacterium Calothrix PCC7601, RcpA and RcpB, were solved to 1.9- and 1.75-A resolution, respectively. RcpA was found in phosphorylated and RcpB in nonphosphorylated form. Both RRs are members of phytochrome-associated, light-sensing two-component signal transduction pathways, based on histidine kinase-mediated receptor autophosphorylation and phosphorelay to a RR. Despite the overall folding similarity to CheY-type RRs ((beta/alpha)(5)-motif), RcpA and RcpB form homodimers, irrespective of their phosphorylation state, giving insight into a signal transduction putatively different from that of other known RRs. Dimerization is accomplished by a C-terminal extension of the RR polypeptide chain, and the surface formed by H4, beta 5, and H5, which constitute a hydrophobic contact area with distinct interactions between residues of either subunit. Sequence alignments reveal that the identified dimerization motif is archetypal for phytochrome-associated RRs, making them a novel subgroup of CheY-type RRs. The protein structures of RcpA and RcpB are compared to the recently presented protein structure of Rcp1 from Synechocystis.
-
===Crystal Structure of the Phosphorylated Cyanobacterial Phytochrome Response Regulator RcpA===
+
Crystal structures of two cyanobacterial response regulators in apo- and phosphorylated form reveal a novel dimerization motif of phytochrome-associated response regulators.,Benda C, Scheufler C, Tandeau de Marsac N, Gartner W Biophys J. 2004 Jul;87(1):476-87. PMID:15240481<ref>PMID:15240481</ref>
-
{{ABSTRACT_PUBMED_15240481}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1k68" style="background-color:#fffaf0;"></div>
-
[[1k68]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Tolypothrix_sp._pcc_7601_=_utex_b_481 Tolypothrix sp. pcc 7601 = utex b 481]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1K68 OCA].
+
==See Also==
==See Also==
-
*[[Response regulator|Response regulator]]
+
*[[Response regulator 3D structure|Response regulator 3D structure]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:015240481</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Tolypothrix sp. pcc 7601 = utex b 481]]
+
</StructureSection>
-
[[Category: Benda, C.]]
+
[[Category: Large Structures]]
-
[[Category: Gaertner, W.]]
+
[[Category: Tolypothrix sp. PCC 7601]]
-
[[Category: Marsac, N Tandeau de.]]
+
[[Category: Benda C]]
-
[[Category: Scheufler, C.]]
+
[[Category: Gaertner W]]
-
[[Category: Chey homologue]]
+
[[Category: Scheufler C]]
-
[[Category: Homodimer]]
+
[[Category: Tandeau de Marsac N]]
-
[[Category: Phosphorylated aspartate]]
+
-
[[Category: Response regulator]]
+
-
[[Category: Signaling protein]]
+

Current revision

Crystal Structure of the Phosphorylated Cyanobacterial Phytochrome Response Regulator RcpA

PDB ID 1k68

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools