This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3gfx
From Proteopedia
(Difference between revisions)
| (5 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3gfx.png|left|200px]] | ||
| - | + | ==Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex== | |
| - | + | <StructureSection load='3gfx' size='340' side='right'caption='[[3gfx]], [[Resolution|resolution]] 2.40Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3gfx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 Klebsiella pneumoniae subsp. pneumoniae MGH 78578]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GFX FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=C2E:9,9-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d 3,2-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)'>C2E</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr> | |
| - | == | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gfx OCA], [https://pdbe.org/3gfx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gfx RCSB], [https://www.ebi.ac.uk/pdbsum/3gfx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gfx ProSAT]</span></td></tr> |
| - | [[3gfx]] is a 2 chain structure with sequence from [ | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A6T8V8_KLEP7 A6T8V8_KLEP7] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/3gfx_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gfx ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[ | + | *[[Beta-glucosidase 3D structures|Beta-glucosidase 3D structures]] |
| - | + | *[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]] | |
| - | + | __TOC__ | |
| - | < | + | </StructureSection> |
| - | [[Category: Klebsiella pneumoniae subsp. pneumoniae | + | [[Category: Klebsiella pneumoniae subsp. pneumoniae MGH 78578]] |
| - | [[Category: Barends | + | [[Category: Large Structures]] |
| - | [[Category: Beitlich | + | [[Category: Barends T]] |
| - | [[Category: Gomelsky | + | [[Category: Beitlich T]] |
| - | [[Category: Griese | + | [[Category: Gomelsky M]] |
| - | [[Category: Hartmann | + | [[Category: Griese J]] |
| - | [[Category: Kirienko | + | [[Category: Hartmann E]] |
| - | [[Category: Reinstein | + | [[Category: Kirienko N]] |
| - | [[Category: Ryjenkov | + | [[Category: Reinstein J]] |
| - | [[Category: Schlichting | + | [[Category: Ryjenkov D]] |
| - | [[Category: Shoeman | + | [[Category: Schlichting I]] |
| - | + | [[Category: Shoeman R]] | |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex
| |||||||||||
