1bue

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1bue" [edit=sysop:move=sysop])
Current revision (06:27, 30 October 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1bue.png|left|200px]]
 
-
{{STRUCTURE_1bue| PDB=1bue | SCENE= }}
+
==NMC-A CARBAPENEMASE FROM ENTEROBACTER CLOACAE==
 +
<StructureSection load='1bue' size='340' side='right'caption='[[1bue]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1bue]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BUE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BUE FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bue FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bue OCA], [https://pdbe.org/1bue PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bue RCSB], [https://www.ebi.ac.uk/pdbsum/1bue PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bue ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BLAN_ENTCL BLAN_ENTCL] Hydrolyzes carbapenems such as imipenem, which are extended-spectrum beta-lactam antibiotics.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bu/1bue_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bue ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The treatment of infectious diseases by penicillin and cephalosporin antibiotics is continuously challenged by the emergence and the dissemination of the numerous TEM and SHV mutant beta-lactamases with extended substrate profiles. These class A beta-lactamases nevertheless remain inefficient against carbapenems, the most effective antibiotics against clinically relevant pathogens. A new member of this enzyme class, NMC-A, was recently reported to hydrolyze at high rates, and hence destroy, all known beta-lactam antibiotics, including carbapenems and cephamycins. The crystal structure of NMC-A was solved to 1.64-A resolution, and reveals modifications in the topology of the substrate-binding site. While preserving the geometry of the essential catalytic residues, the active site of the enzyme presents a disulfide bridge between residues 69 and 238, and certain other structural differences compared with the other beta-lactamases. These unusual features in class A beta-lactamases involve amino acids that participate in enzyme-substrate interactions, which suggested that these structural factors should be related to the very broad substrate specificity of this enzyme. The comparison of the NMC-A structure with those of other class A enzymes and enzyme-ligand complexes, indicated that the position of Asn-132 in NMC-A provides critical additional space in the region of the protein where the poorer substrates for class A beta-lactamases, such as cephamycins and carbapenems, need to be accommodated.
-
===NMC-A CARBAPENEMASE FROM ENTEROBACTER CLOACAE===
+
X-ray analysis of the NMC-A beta-lactamase at 1.64-A resolution, a class A carbapenemase with broad substrate specificity.,Swaren P, Maveyraud L, Raquet X, Cabantous S, Duez C, Pedelacq JD, Mariotte-Boyer S, Mourey L, Labia R, Nicolas-Chanoine MH, Nordmann P, Frere JM, Samama JP J Biol Chem. 1998 Oct 9;273(41):26714-21. PMID:9756914<ref>PMID:9756914</ref>
-
{{ABSTRACT_PUBMED_9756914}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1bue" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
[[1bue]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BUE OCA].
+
*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:009756914</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Beta-lactamase]]
+
</StructureSection>
[[Category: Enterobacter cloacae]]
[[Category: Enterobacter cloacae]]
-
[[Category: Cabantous, S.]]
+
[[Category: Large Structures]]
-
[[Category: Frere, J M.]]
+
[[Category: Cabantous S]]
-
[[Category: Maveyraud, L.]]
+
[[Category: Frere JM]]
-
[[Category: Mourey, L.]]
+
[[Category: Maveyraud L]]
-
[[Category: Pedelacq, J D.]]
+
[[Category: Mourey L]]
-
[[Category: Samama, J P.]]
+
[[Category: Pedelacq JD]]
-
[[Category: Swaren, P.]]
+
[[Category: Samama JP]]
-
[[Category: Antibiotic resistance]]
+
[[Category: Swaren P]]
-
[[Category: Class a carbapenemase]]
+
-
[[Category: Hydrolase]]
+

Current revision

NMC-A CARBAPENEMASE FROM ENTEROBACTER CLOACAE

PDB ID 1bue

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools