This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ox1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:21, 25 October 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ox1.gif|left|200px]]<br /><applet load="1ox1" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1ox1, resolution 2.00&Aring;" />
 
-
'''crystal structure of the bovine trypsin complex with a synthetic 11 peptide inhibitor'''<br />
 
-
==About this Structure==
+
==crystal structure of the bovine trypsin complex with a synthetic 11 peptide inhibitor==
-
1OX1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with <scene name='pdbligand=CA:'>CA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OX1 OCA].
+
<StructureSection load='1ox1' size='340' side='right'caption='[[1ox1]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
[[Category: Bos taurus]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[1ox1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OX1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OX1 FirstGlance]. <br>
-
[[Category: Trypsin]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
[[Category: Huang, Q.]]
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
[[Category: Huang, Y.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ox1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ox1 OCA], [https://pdbe.org/1ox1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ox1 RCSB], [https://www.ebi.ac.uk/pdbsum/1ox1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ox1 ProSAT]</span></td></tr>
-
[[Category: Kusunoki, M.]]
+
</table>
-
[[Category: Miyake, H.]]
+
== Function ==
-
[[Category: Tang, Y.]]
+
[https://www.uniprot.org/uniprot/TRY1_BOVIN TRY1_BOVIN]
-
[[Category: Wu, G.]]
+
== Evolutionary Conservation ==
-
[[Category: Zhu, G.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: CA]]
+
Check<jmol>
-
[[Category: beta-trypsin]]
+
<jmolCheckbox>
-
[[Category: hydrolase]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ox/1ox1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ox1 ConSurf].
 +
<div style="clear:both"></div>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 14:22:35 2008''
+
==See Also==
 +
*[[Trypsin 3D structures|Trypsin 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bos taurus]]
 +
[[Category: Large Structures]]
 +
[[Category: Huang Q]]
 +
[[Category: Huang Y]]
 +
[[Category: Kusunoki M]]
 +
[[Category: Miyake H]]
 +
[[Category: Tang Y]]
 +
[[Category: Wu G]]
 +
[[Category: Zhu G]]

Current revision

crystal structure of the bovine trypsin complex with a synthetic 11 peptide inhibitor

PDB ID 1ox1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools