1bug

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:12, 9 October 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1bug.png|left|200px]]
 
-
{{STRUCTURE_1bug| PDB=1bug | SCENE= }}
+
==CATECHOL OXIDASE FROM IPOMOEA BATATAS (SWEET POTATOES)-INHIBITOR COMPLEX WITH PHENYLTHIOUREA (PTU)==
 +
<StructureSection load='1bug' size='340' side='right'caption='[[1bug]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1bug]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ipomoea_batatas Ipomoea batatas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BUG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BUG FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=URS:N-PHENYLTHIOUREA'>URS</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bug OCA], [https://pdbe.org/1bug PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bug RCSB], [https://www.ebi.ac.uk/pdbsum/1bug PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bug ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PPO1_IPOBA PPO1_IPOBA] Catalyzes the oxidation of mono- and o-diphenols to o-diquinones.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bu/1bug_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bug ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Catechol oxidases are ubiquitous plant enzymes containing a dinuclear copper center. In the wound-response mechanism of the plant they catalyze the oxidation of a broad range of ortho-diphenols to the corresponding o-quinones coupled with the reduction of oxygen to water. The crystal structures of the enzyme from sweet potato in the resting dicupric Cu(II)-Cu(II) state, the reduced dicuprous Cu(I)-Cu(I) form, and in complex with the inhibitor phenylthiourea were analyzed. The catalytic copper center is accommodated in a central four-helix-bundle located in a hydrophobic pocket close to the surface. Both metal binding sites are composed of three histidine ligands. His 109, ligated to the CuA site, is covalently linked to Cys 92 by an unusual thioether bond. Based on biochemical, spectroscopic and the presented structural data, a catalytical mechanism is proposed in which one of the oxygen atoms of the diphenolic substrate binds to CuB of the oxygenated enzyme.
-
===CATECHOL OXIDASE FROM IPOMOEA BATATAS (SWEET POTATOES)-INHIBITOR COMPLEX WITH PHENYLTHIOUREA (PTU)===
+
Crystal structure of a plant catechol oxidase containing a dicopper center.,Klabunde T, Eicken C, Sacchettini JC, Krebs B Nat Struct Biol. 1998 Dec;5(12):1084-90. PMID:9846879<ref>PMID:9846879</ref>
-
{{ABSTRACT_PUBMED_9846879}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
 
+
</div>
-
==About this Structure==
+
<div class="pdbe-citations 1bug" style="background-color:#fffaf0;"></div>
-
[[1bug]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ipomoea_batatas Ipomoea batatas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BUG OCA].
+
== References ==
-
 
+
<references/>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:009846879</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Catechol oxidase]]
+
[[Category: Ipomoea batatas]]
[[Category: Ipomoea batatas]]
-
[[Category: Eicken, C.]]
+
[[Category: Large Structures]]
-
[[Category: Klabunde, T.]]
+
[[Category: Eicken C]]
-
[[Category: Krebs, B.]]
+
[[Category: Klabunde T]]
-
[[Category: Sacchettini, J C.]]
+
[[Category: Krebs B]]
-
[[Category: Catechol oxidase]]
+
[[Category: Sacchettini JC]]
-
[[Category: Dicopper enzyme]]
+
-
[[Category: Ipomoea batata]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

CATECHOL OXIDASE FROM IPOMOEA BATATAS (SWEET POTATOES)-INHIBITOR COMPLEX WITH PHENYLTHIOUREA (PTU)

PDB ID 1bug

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1bug"
Personal tools