3bul

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3bul" [edit=sysop:move=sysop])
Current revision (08:50, 30 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bul.png|left|200px]]
 
-
{{STRUCTURE_3bul| PDB=3bul | SCENE= }}
+
==E. coli I690C/G743C MetH C-terminal fragment (649-1227)==
 +
<StructureSection load='3bul' size='340' side='right'caption='[[3bul]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3bul]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BUL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BUL FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bul OCA], [https://pdbe.org/3bul PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bul RCSB], [https://www.ebi.ac.uk/pdbsum/3bul PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bul ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/METH_ECOLI METH_ECOLI] Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bu/3bul_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bul ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
B(12)-dependent methionine synthase (MetH) from Escherichia coli is a large modular protein that is alternately methylated by methyltetrahydrofolate to form methylcobalamin and demethylated by homocysteine to form cob(I)alamin. Major domain rearrangements are required to allow cobalamin to react with three different substrates: homocysteine, methyltetrahydrofolate, and S-adenosyl-l-methionine (AdoMet). These same rearrangements appear to preclude crystallization of the wild-type enzyme. Disulfide cross-linking was used to lock a C-terminal fragment of the enzyme into a unique conformation. Cysteine point mutations were introduced at Ile-690 and Gly-743. These cysteine residues span the cap and the cobalamin-binding module and form a cross-link that reduces the conformational space accessed by the enzyme, facilitating protein crystallization. Here, we describe an x-ray structure of the mutant fragment in the reactivation conformation; this conformation enables the transfer of a methyl group from AdoMet to the cobalamin cofactor. In the structure, the axial ligand to the cobalamin, His-759, dissociates from the cobalamin and forms intermodular contacts with residues in the AdoMet-binding module. This unanticipated intermodular interaction is expected to play a major role in controlling the distribution of conformers required for the catalytic and the reactivation cycles of the enzyme.
-
===E. coli I690C/G743C MetH C-terminal fragment (649-1227)===
+
A disulfide-stabilized conformer of methionine synthase reveals an unexpected role for the histidine ligand of the cobalamin cofactor.,Datta S, Koutmos M, Pattridge KA, Ludwig ML, Matthews RG Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4115-20. Epub 2008 Mar 10. PMID:18332423<ref>PMID:18332423</ref>
-
{{ABSTRACT_PUBMED_18332423}}
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 3bul" style="background-color:#fffaf0;"></div>
-
==About this Structure==
+
==See Also==
-
[[3bul]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BUL OCA].
+
*[[Methionine synthase 3D structures|Methionine synthase 3D structures]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:018332423</ref><references group="xtra"/>
+
__TOC__
 +
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Methionine synthase]]
+
[[Category: Large Structures]]
-
[[Category: Koutmos, M.]]
+
[[Category: Koutmos M]]
-
[[Category: Ludwig, M L.]]
+
[[Category: Ludwig ML]]
-
[[Category: Pattridge, K A.]]
+
[[Category: Pattridge KA]]
-
[[Category: Amino-acid biosynthesis]]
+
-
[[Category: Cobalamin]]
+
-
[[Category: Cobalt]]
+
-
[[Category: H759]]
+
-
[[Category: Intermodular interaction]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Meth]]
+
-
[[Category: Methionine biosynthesis]]
+
-
[[Category: Methyltransferase]]
+
-
[[Category: Reactivation conformation]]
+
-
[[Category: S-adenosyl-l-methionine]]
+
-
[[Category: Transferase]]
+

Current revision

E. coli I690C/G743C MetH C-terminal fragment (649-1227)

PDB ID 3bul

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools