2lsc
From Proteopedia
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| - | [[Image:2lsc.png|left|200px]] | ||
| - | + | ==Solution structure of 2'F-ANA and ANA self-complementary duplex== | |
| + | <StructureSection load='2lsc' size='340' side='right'caption='[[2lsc]]' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[2lsc]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LSC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LSC FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A5O:ADENINE+ARABINOSE-5-PHOSPHATE'>A5O</scene>, <scene name='pdbligand=CFL:4-AMINO-1-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)PYRIMIDIN-2(1H)-ONE'>CFL</scene>, <scene name='pdbligand=GFL:2-AMINO-9-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE'>GFL</scene>, <scene name='pdbligand=UAR:URACIL+ARABINOSE-5-PHOSPHATE'>UAR</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lsc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lsc OCA], [https://pdbe.org/2lsc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lsc RCSB], [https://www.ebi.ac.uk/pdbsum/2lsc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lsc ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We report here the first structure of double helical arabino nucleic acid (ANA), the C2'-stereoisomer of RNA, and the 2'-fluoro-ANA analogue (2'F-ANA). A chimeric dodecamer based on the Dickerson sequence, containing a contiguous central segment of arabino nucleotides, flanked by two 2'-deoxy-2'F-ANA wings was studied. Our data show that this chimeric oligonucleotide can adopt two different structures of comparable thermal stabilities. One structure is a monomeric hairpin in which the stem is formed by base paired 2'F-ANA nucleotides and the loop by unpaired ANA nucleotides. The second structure is a bimolecular duplex, with all the nucleotides (2'F-ANA and ANA) forming Watson-Crick base pairs. The duplex structure is canonical B-form, with all arabinoses adopting a pure C2'-endo conformation. In the ANA:ANA segment, steric interactions involving the 2'-OH substituent provoke slight changes in the glycosidic angles and, therefore, in the ANA:ANA base pair geometry. These distortions are not present in the 2'F-ANA:2'F-ANA regions of the duplex, where the -OH substituent is replaced by a smaller fluorine atom. 2'F-ANA nucleotides adopt the C2'-endo sugar pucker and fit very well into the geometry of B-form duplex, allowing for favourable 2'F...H8 interactions. This interaction shares many features of pseudo-hydrogen bonds previously observed in 2'F-ANA:RNA hybrids and in single 2'F-ANA nucleotides. | ||
| - | + | The solution structure of double helical arabino nucleic acids (ANA and 2'F-ANA): effect of arabinoses in duplex-hairpin interconversion.,Martin-Pintado N, Yahyaee-Anzahaee M, Campos-Olivas R, Noronha AM, Wilds CJ, Damha MJ, Gonzalez C Nucleic Acids Res. 2012 Oct 1;40(18):9329-39. doi: 10.1093/nar/gks672. Epub 2012 , Jul 14. PMID:22798499<ref>PMID:22798499</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | == | + | <div class="pdbe-citations 2lsc" style="background-color:#fffaf0;"></div> |
| - | [[ | + | == References == |
| - | [[Category: Campos | + | <references/> |
| - | [[Category: Damha | + | __TOC__ |
| - | [[Category: Gonzalez | + | </StructureSection> |
| - | [[Category: Martin-Pintado | + | [[Category: Large Structures]] |
| - | [[Category: Noronha | + | [[Category: Campos R]] |
| - | [[Category: Wilds | + | [[Category: Damha M]] |
| - | [[Category: Yahyaee | + | [[Category: Gonzalez C]] |
| - | + | [[Category: Martin-Pintado N]] | |
| - | + | [[Category: Noronha A]] | |
| + | [[Category: Wilds C]] | ||
| + | [[Category: Yahyaee M]] | ||
Current revision
Solution structure of 2'F-ANA and ANA self-complementary duplex
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Categories: Large Structures | Campos R | Damha M | Gonzalez C | Martin-Pintado N | Noronha A | Wilds C | Yahyaee M
