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4g9i

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[[Image:4g9i.jpg|left|200px]]
 
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{{STRUCTURE_4g9i| PDB=4g9i | SCENE= }}
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==Crystal structure of T.kodakarensis HypF==
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<StructureSection load='4g9i' size='340' side='right'caption='[[4g9i]], [[Resolution|resolution]] 4.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4g9i]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermococcus_kodakarensis_KOD1 Thermococcus kodakarensis KOD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G9I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G9I FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g9i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g9i OCA], [https://pdbe.org/4g9i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g9i RCSB], [https://www.ebi.ac.uk/pdbsum/4g9i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g9i ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q5JII4_THEKO Q5JII4_THEKO]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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HypF is involved in the biosynthesis of the CN ligand of the NiFe(CN)(2)CO centre of [NiFe]-hydrogenases. Here, the full-length structure of HypF from Thermococcus kodakarenesis is reported at 4.5 A resolution. The N-terminal acylphosphatase-like (ACP) domain interacts with the zinc-finger domain with some flexibility in its relative position. Molecular-surface analysis shows that a deep pocket formed between the ACP and zinc-finger domains is highly conserved and has positive potential. These results suggest that the positively charged pocket identified is involved in the hydrolysis of carbamoyl phosphate and the formation of a carbamoyl intermediate.
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===Crystal structure of T.kodakarensis HypF===
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Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1.,Tominaga T, Watanabe S, Matsumi R, Atomi H, Imanaka T, Miki K Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1;68(Pt 10):1153-7., doi: 10.1107/S1744309112036421. Epub 2012 Sep 22. PMID:23027738<ref>PMID:23027738</ref>
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{{ABSTRACT_PUBMED_23027738}}
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4g9i" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[4g9i]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermococcus_kodakarensis_kod1 Thermococcus kodakarensis kod1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G9I OCA].
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*[[HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures|HypA%2C HypB%2C HypC%2C HypD%2C HypE and HypF 3D structures]]
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[[Category: Thermococcus kodakarensis kod1]]
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== References ==
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[[Category: Atomi, H.]]
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<references/>
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[[Category: Imanaka, T.]]
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__TOC__
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[[Category: Matsumi, R.]]
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</StructureSection>
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[[Category: Miki, K.]]
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[[Category: Large Structures]]
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[[Category: Tominaga, T.]]
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[[Category: Thermococcus kodakarensis KOD1]]
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[[Category: Watanabe, S.]]
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[[Category: Atomi H]]
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[[Category: Atp binding]]
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[[Category: Imanaka T]]
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[[Category: Carbamoylation]]
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[[Category: Matsumi R]]
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[[Category: Hydrogenase maturation]]
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[[Category: Miki K]]
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[[Category: Transferase]]
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[[Category: Tominaga T]]
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[[Category: Zinc finger]]
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[[Category: Watanabe S]]

Current revision

Crystal structure of T.kodakarensis HypF

PDB ID 4g9i

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