This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ee6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1ee6" [edit=sysop:move=sysop])
Current revision (10:01, 20 March 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ee6.png|left|200px]]
 
-
{{STRUCTURE_1ee6| PDB=1ee6 | SCENE= }}
+
==CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.==
-
 
+
<StructureSection load='1ee6' size='340' side='right'caption='[[1ee6]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1ee6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._KSM-P15 Bacillus sp. KSM-P15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EE6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EE6 FirstGlance]. <br>
-
 
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
==About this Structure==
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
[[1ee6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EE6 OCA].
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ee6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ee6 OCA], [https://pdbe.org/1ee6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ee6 RCSB], [https://www.ebi.ac.uk/pdbsum/1ee6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ee6 ProSAT]</span></td></tr>
-
 
+
</table>
-
==Reference==
+
== Function ==
-
<ref group="xtra">PMID:011717490</ref><references group="xtra"/>
+
[https://www.uniprot.org/uniprot/Q9RHW0_BACSP Q9RHW0_BACSP]
-
[[Category: Bacillus sp.]]
+
== Evolutionary Conservation ==
-
[[Category: Pectate lyase]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Akita, M.]]
+
Check<jmol>
-
[[Category: Ito, S.]]
+
<jmolCheckbox>
-
[[Category: Kobayashi, T.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ee/1ee6_consurf.spt"</scriptWhenChecked>
-
[[Category: Suzuki, A.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Yamane, T.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: High-alkaline]]
+
</jmolCheckbox>
-
[[Category: Low-molecular-weight]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ee6 ConSurf].
-
[[Category: Lyase]]
+
<div style="clear:both"></div>
-
[[Category: Parallel beta-helix]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Bacillus sp. KSM-P15]]
 +
[[Category: Large Structures]]
 +
[[Category: Akita M]]
 +
[[Category: Ito S]]
 +
[[Category: Kobayashi T]]
 +
[[Category: Suzuki A]]
 +
[[Category: Yamane T]]

Current revision

CRYSTAL STRUCTURE OF PECTATE LYASE FROM BACILLUS SP. STRAIN KSM-P15.

PDB ID 1ee6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools