4ajy

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[[Image:4ajy.jpg|left|200px]]
 
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{{STRUCTURE_4ajy| PDB=4ajy | SCENE= }}
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==von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide==
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<StructureSection load='4ajy' size='340' side='right'caption='[[4ajy]], [[Resolution|resolution]] 1.73&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[4ajy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AJY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4AJY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.73&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HYP:4-HYDROXYPROLINE'>HYP</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ajy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ajy OCA], [https://pdbe.org/4ajy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ajy RCSB], [https://www.ebi.ac.uk/pdbsum/4ajy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ajy ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/ELOB_HUMAN ELOB_HUMAN] SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. Subunit A is transcriptionally active and its transcription activity is strongly enhanced by binding to the dimeric complex of the SIII regulatory subunits B and C (elongin BC complex).<ref>PMID:7638163</ref> <ref>PMID:15590694</ref> The elongin BC complex seems to be involved as an adapter protein in the proteasomal degradation of target proteins via different E3 ubiquitin ligase complexes, including the von Hippel-Lindau ubiquitination complex CBC(VHL). By binding to BC-box motifs it seems to link target recruitment subunits, like VHL and members of the SOCS box family, to Cullin/RBX1 modules that activate E2 ubiquitination enzymes.<ref>PMID:7638163</ref> <ref>PMID:15590694</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Fragment screening is widely used to identify attractive starting points for drug design. However, its potential and limitations to assess the tractability of often challenging protein:protein interfaces have been underexplored. Here, we address this question by means of a systematic deconstruction of lead-like inhibitors of the pVHL:HIF-1alpha interaction into their component fragments. Using biophysical techniques commonly employed for screening, we could only detect binding of fragments that violate the Rule of Three, are more complex than those typically screened against classical druggable targets, and occupy two adjacent binding subsites at the interface rather than just one. Analyses based on ligand and group lipophilicity efficiency of anchored fragments were applied to dissect the individual subsites and probe for binding hot spots. The implications of our findings for targeting protein interfaces by fragment-based approaches are discussed.
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===von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide===
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Dissecting fragment-based lead discovery at the von hippel-lindau protein:hypoxia inducible factor 1alpha protein-protein interface.,Van Molle I, Thomann A, Buckley DL, So EC, Lang S, Crews CM, Ciulli A Chem Biol. 2012 Oct 26;19(10):1300-12. doi: 10.1016/j.chembiol.2012.08.015. PMID:23102223<ref>PMID:23102223</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4ajy" style="background-color:#fffaf0;"></div>
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==About this Structure==
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==See Also==
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[[4ajy]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4AJY OCA].
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*[[Elongation factor 3D structures|Elongation factor 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Buckley, D L.]]
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[[Category: Large Structures]]
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[[Category: Ciulli, A.]]
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[[Category: Buckley DL]]
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[[Category: Crews, C M.]]
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[[Category: Ciulli A]]
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[[Category: Lang, S.]]
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[[Category: Crews CM]]
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[[Category: Molle, I Van.]]
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[[Category: Lang S]]
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[[Category: So, E C.]]
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[[Category: So EC]]
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[[Category: Thomann, A.]]
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[[Category: Thomann A]]
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[[Category: E3 ubiquitin ligase]]
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[[Category: Van Molle I]]
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[[Category: Hypoxic signaling]]
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[[Category: Transcription]]
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[[Category: Transcription factor]]
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Current revision

von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide

PDB ID 4ajy

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