This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3h8t
From Proteopedia
(Difference between revisions)
m (Protected "3h8t" [edit=sysop:move=sysop]) |
|||
| (6 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:3h8t.png|left|200px]] | ||
| - | + | ==Structure of Porphyromonas gingivalis heme-binding protein HmuY in complex with Heme== | |
| - | + | <StructureSection load='3h8t' size='340' side='right'caption='[[3h8t]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3h8t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3H8T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3H8T FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | |
| - | == | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | [[3h8t]] is a 2 chain structure with sequence from [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3h8t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3h8t OCA], [https://pdbe.org/3h8t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3h8t RCSB], [https://www.ebi.ac.uk/pdbsum/3h8t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3h8t ProSAT]</span></td></tr> |
| - | + | </table> | |
| - | == | + | == Function == |
| - | < | + | [https://www.uniprot.org/uniprot/A2I2W2_PORGN A2I2W2_PORGN] |
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/h8/3h8t_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3h8t ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Porphyromonas gingivalis]] | [[Category: Porphyromonas gingivalis]] | ||
| - | [[Category: Gomis-Ruth | + | [[Category: Gomis-Ruth FX]] |
| - | [[Category: Guevara | + | [[Category: Guevara T]] |
| - | [[Category: Olczak | + | [[Category: Olczak M]] |
| - | [[Category: Olczak | + | [[Category: Olczak T]] |
| - | [[Category: Potempa | + | [[Category: Potempa J]] |
| - | [[Category: Sola | + | [[Category: Sola M]] |
| - | [[Category: Sroka | + | [[Category: Sroka A]] |
| - | [[Category: Tallant | + | [[Category: Tallant C]] |
| - | [[Category: Wojtowicz | + | [[Category: Wojtowicz H]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of Porphyromonas gingivalis heme-binding protein HmuY in complex with Heme
| |||||||||||
