Ribosomal protein S16

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[[Image:RPS16.png|left|200px|thumb|Crystal Structure of Ribosomal protein S16 from [[2zm6]], chain P]]
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<StructureSection load='3bn0' size='350' side='right' scene='' caption='Ribosomal protein S16 complex with glycerol (PDB code [[3bn0]])'>
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{{STRUCTURE_3bn0| PDB=3bn0 | SIZE=400| SCENE= |right|CAPTION=Ribosomal protein S16 complex with glycerol [[3bn0]]}}
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[[Ribosomal protein S16]] (RPS16) is one of the 21 proteins which belong to the 30S <scene name='Ribosomal_protein_S16/Cv/2'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]] or the 30 proteins which belong to the 40S small subunit of the eukaryotic ribosome. It exhibits endonuclease activity<ref>PMID:8730873</ref>.
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</StructureSection>
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[[Ribosomal protein S16]] (RPS16) is one of the 22 proteins which belong to the <scene name='Ribosomal_protein_S16/Cv/2'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]]. It exhibits endonuclease activity. The images at the left and at the right correspond to one representative RPS16, ''i.e.'' the crystal structure of Ribosomal protein S16 from ''Thermus thermophilus'' ([[2zm6]], chain P).
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{{TOC limit|limit=2}}
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== 3D Structures of Ribosomal protein S16 ==
== 3D Structures of Ribosomal protein S16 ==
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''Update July 2012''
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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===S16===
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[[3bn0]] – RPS16 – ''Aquifex aeolicus''<br />
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[[1emw]] – TtRPS16 – NMR - ''Thermus thermophilus''
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===S16 in small ribosomal subunit===
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[[2zm6]], [[1n36]], [[1j5e]], [[3oge]], [[3ogy]], [[3ohc]], [[3ohd]], [[3ohy]], [[3oi0]], [[3oi2]], [[3oi4]], [[3oto]] - TtRPS16 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br />
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[[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]], [[3pyn]], [[3pyq]], [[3pys]], [[3pyu]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+RNA fragment<br />
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[[3kc4]] – EcRPS16 in 30S ribosomal subunit - ''Escherichia coli''<br />
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[[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]], [[3oaq]], [[3oar]], [[3ofa]], [[3ofb]], [[3ofo]], [[3ofp]], [[3ofx]], [[3ofy]], [[3or9]], [[3ora]] - EcRPS16 in 30S ribosomal subunit+16S RRNA<br />
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[[1i94]], [[1fka]], [[3uxs]], [[3uxt]] - TtRPS16 in 30S ribosomal subunit+16S RRNA<br />
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[[1p87]], [[1p6g]] - EcRPS16 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br />
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[[3bbn]] - RPS16 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
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===S16 in small + large ribosomal subunit===
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[[1ml5]] - EcRPS16 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
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===S16 in small ribosomal subunit+ chain release factor===
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[[3mr8]], [[3ms0]] – TtRPS16 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br />
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[[3d5a]], [[3d5c]] - TtRPS16 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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[[3zvo]] – TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Met +mRNA +16S RRNA+chain release factor 3<br />
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[[2b64]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br />
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[[2b9m]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br />
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[[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS16 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br />
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[[3f1e]], [[3f1g]] - TtRPS16 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA<br />
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[[3uoq]] - EcRPS16 + 16S RRNA + mRNA + peptide chain release factor<br />
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===S16 in small ribosomal subunit+tRNA+mRNA===
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[[2hgi]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br />
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[[2hgp]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[3t1h]], [[3t1y]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Lys +mRNA<br />
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[[3tvf]], [[3tvg]], [[3uyd]], [[3uyf]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA<br />
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[[3uz6]], [[3uz7]], [[3uzg]], [[3uzi]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA<br />
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[[2i2p]], [[2i2u]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[2hgr]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
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[[1yl4]] – TtRPS16 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
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[[1pns]] - EcRPS16 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br />
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[[3j0u]], [[3j0v]], [[3j0x]], [[3j0z]], [[3j10]] – EcRPS16 in 30S ribosomal subunit+ A-site tRNA + P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
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[[3j13]] – EcRPS16 in 30S ribosomal subunit+ P-site tRNA +16S RRNA+mRNA – Cryo-EM<br />
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[[1xnq]], [[1xnr]] - TtRPS16 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
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===S16 in small ribosomal subunit+A-site tRNA===
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[[2uxd]], [[2uxc]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br />
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[[1n32]], [[1n33]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
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[[1n34]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
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[[1xmo]], [[1xmq]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
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[[2uxb]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
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===S16 in small ribosomal subunit+P-site tRNA===
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[[3i8g]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br />
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[[3i8h]], [[3i9b]], [[3i9d]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br />
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[[1ibk]] - TtRPS16 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
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[[2wwl]] - EcRPS16 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br />
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[[3i1q]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA<br />
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[[3i1s]], [[3i1z]], [[3i21]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
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===S16 in small ribosomal subunit+A-site tRNA+P-site tRNA===
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[[1ibl]], [[1ibm]] - TtRPS16 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
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===S16 in small ribosomal subunit+P-site tRNA+E-site tRNA===
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[[2ow8]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br />
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[[2b9o]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br />
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[[2qnh]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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===S16 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA===
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[[2gy9]], [[2gyb]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br />
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[[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
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[[3e1a]], [[3e1c]] - EcRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
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===S16 in small ribosomal subunit + antibiotics===
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[[1i95]], [[1i97]], [[2hhh]], [[2f4v]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+antibiotic<br />[[1hnx]], [[1hnw]], [[1hnz]], [[1fjg]] – TtRPS16 in 30S ribosomal subunit+16S RRNA+mRNA fragment+antibiotic<br />
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[[2qbb]], [[2qb9]], [[1vs5]], [[1vs7]] , [[2qan]], [[2qal]], [[2qou]], [[2qow]], [[2qoy]], [[2qp0]], [[2z4k]], [[2z4m]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+antibiotic<br />
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[[2j00]], [[2j02]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br />
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[[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS14 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin<br />
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[[3knj]], [[3knh]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin<br />
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[[3knl]], [[3knn]] - TtRPS16 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin<br />
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[[3uz3]], [[3uz4]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Leu + tRNA fMet + mRNA + paromomycin<br />
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[[3uzl]], [[3uzm]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+tRNA Tyr + tRNA fMet + mRNA + paromomycin
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===S16 in small ribosomal subunit + ribosome recycling factor===
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[[2qbd]], [[2qbf]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br />
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[[3r8n]], [[3r8o]] – EcRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor + mRNA + tRNA<br />
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[[2qbh]], [[2qbj]] - EcRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br />
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[[2v46]], [[2v48]] - TtRPS16 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
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===S16 in small ribosomal subunit + elongation factor===
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[[2wri]], [[2wrk]], [[2xsy]], [[2xuy]] - TtRPS16 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br />
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[[2wrn]], [[2wrq]] - TtRPS16 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br />
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[[3fic]] - TtRPS16 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br />
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[[4abr]] - TtRPS16 in 30S ribosomal subunit+THX + E/P-site tRNA fMet +mRNA codon+16S RRNA+elongation factor TU<br />
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[[3izv]] – EcRPS16 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+elongation factor TU<br />
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[[3j18]] - EcRPS16 in 30S ribosomal subunit+A/T-site tRNA Phe +16S RRNA+ mRNA + SSRA-binding protein + formyl-Met specific initiator tRNA + elongation factor G – Cryo-EM<br />
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[[3izw]] – EcRPS16 in 30S ribosomal subunit+A-site tRNA Phe +mRNA +16S RRNA+elongation factor TU<br />
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[[2y0u]], [[2y0w]], [[2y0y]], [[2y12]], [[2y10]], [[2y18]], [[2y14]], [[2y16]] – TtRPS16 in 30S ribosomal subunit+THX+A-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU<br />
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[[2xqd]] – TtRPS16 in 30S ribosomal subunit+THX+E-site tRNA+mRNA +16S RRNA+elongation factor TU-B<br />
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[[3fih]] - EcRPS16 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br />
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[[3huw]], [[3huy]] - TtRPS16 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br />
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[[1s1h]] - yRPS16 in 40S ribosomal subunit+18S RRNA+elongation factor 2 – Cryo-EM – yeast
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===S16 in small ribosomal subunit + translation initiation factor===
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[[1i96]] - TtRPS16 in 30S ribosomal subunit+THX+IF3+16S RRNA<br />
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[[1hr0]] - TtRPS16 in 30S ribosomal subunit+THX+IF+16S RRNA
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===S16 in small ribosomal subunit + various proteins===
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[[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS16 in 30S ribosomal subunit+toxin RelE+16S RRNA<br />
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[[4dh9]], [[4dhb]] - TtRPS16 in 30S ribosomal subunit +16S RRNA+mRNA+P-site tRNA fMet +THX + YAEJ<br />
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[[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS16 in 30S ribosomal subunit+protein Y+16S RRNA<br />
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[[2xfz]], [[2xg1]] - TtRPS16 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA<br />
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[[3jyv]] - RPS16+RPS0+RPS2+RPS3+RPS5+RPS9+RPS11+RPS13+RPS15+RPS14+RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - ''Thermomyces lanuginosus''<br />
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[[3j00]] – EcRPS16 + 16S RRNA + FTSQ + apolipoprotein A-I<br />
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[[2ykr]] – EcRPS16 + 16S RRNA + GMPPNP + GTPase RSGA<br />
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[[4adv]] - EcRPS16 + 16S RRNA + methyltransferase – Cryo EM<br />
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[[4a2i]] – EcRPS16 + 16S RRNA + GTPase RSGA – Cryo EM
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===S16 in small 40S ribosomal subunit + various proteins===
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[[2zkq]] – RPS16 in 40S ribosomal subunit+RNA fragments+RACK1+18S RRNA<br />
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*Ribosomal protein S16
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[[3iz6]] – RPS16 in 40S ribosomal subunit+RACK1 – wheat – Cryo EM<br />
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[[3izb]] - yRPS16 in 40S ribosomal subunit+ RACK1 – yeast - Cryo-EM<br />
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[[3u5c]], [[3u5g]] - yRPS16 in 40S ribosomal subunit+ RACK1 + suppressor protein SMT1<br />
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[[3o2z]], [[3o30]] – yRPS16 in 40S ribosomal subunit+18S RRNA+RACK1<br />
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===S16 in part of small ribosomal subunit===
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**[[3bn0]] – RPS16 – ''Aquifex aeolicus''<br />
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**[[1emw]] – TtRPS16 – NMR - ''Thermus thermophilus''
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[[3iy8]] – EcRPS16+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS17+EcRPS18+''Leishmania taretolae'' mRNA
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*Ribosomal protein S16 in part of small ribosomal subunit
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**[[3iy8]] – EcRPS16+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS17+EcRPS18+''Leishmania taretolae'' mRNA - ''Escherichia coli''
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}}
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== References ==
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<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Ribosomal protein S16 complex with glycerol (PDB code 3bn0)

Drag the structure with the mouse to rotate

3D Structures of Ribosomal protein S16

Updated on 01-October-2017

References

  1. ↑ Oberto J, Bonnefoy E, Mouray E, Pellegrini O, Wikstrom PM, Rouviere-Yaniv J. The Escherichia coli ribosomal protein S16 is an endonuclease. Mol Microbiol. 1996 Mar;19(6):1319-30. PMID:8730873

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

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