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1bwv

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[[Image:1bwv.gif|left|200px]]<br />
 
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<applet load="1bwv" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1bwv, resolution 2.4&Aring;" />
 
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'''ACTIVATED RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE (RUBISCO) COMPLEXED WITH THE REACTION INTERMEDIATE ANALOGUE 2-CARBOXYARABINITOL 1,5-BISPHOSPHATE'''<br />
 
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==Overview==
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==Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate==
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We determined the crystal structure of spinach ribulose-1, 5-bisphosphate, carboxylase/oxygenase (Rubisco) by x-ray diffraction at 1.8-A resolution, and found that the enzyme contained two kinds of S, SI and SII, present in, equal number and disposed in an orderly way within the Rubisco holoenzyme., The electron density maps suggested that leucine was at residue 56 in SI, although histidine was at that position in SII. There were other residue, differences. Thus, spinach Rubisco has a L8SI4SII4 subunit structure. The, orderly disposition of the heterogeneous small subunits in the Rubisco, holoenzyme provides accounts of a multigene family of S in plants.
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<StructureSection load='1bwv' size='340' side='right'caption='[[1bwv]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1bwv]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Galdieria_partita Galdieria partita]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BWV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BWV FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAP:2-CARBOXYARABINITOL-1,5-DIPHOSPHATE'>CAP</scene>, <scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bwv OCA], [https://pdbe.org/1bwv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bwv RCSB], [https://www.ebi.ac.uk/pdbsum/1bwv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bwv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O98949_9RHOD O98949_9RHOD] RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (By similarity).[HAMAP-Rule:MF_01338]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bw/1bwv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bwv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco, EC 4.1.1. 39) obtained from a thermophilic red alga Galdieria partita has the highest specificity factor of 238 among the Rubiscos hitherto reported. Crystal structure of activated Rubisco from G. partita complexed with the reaction intermediate analogue, 2-carboxyarabinitol 1,5-bisphosphate (2-CABP) has been determined at 2.4-A resolution. Compared with other Rubiscos, different amino residues bring the structural differences in active site, which are marked around the binding sites of P-2 phosphate of 2-CABP. Especially, side chains of His-327 and Arg-295 show the significant differences from those of spinach Rubisco. Moreover, the side chains of Asn-123 and His-294 which are reported to bind the substrate, ribulose 1,5-bisphosphate, form hydrogen bonds characteristic of Galdieria Rubisco. Small subunits of Galdieria Rubisco have more than 30 extra amino acid residues on the C terminus, which make up a hairpin-loop structure to form many interactions with the neighboring small subunits. When the structures of Galdieria and spinach Rubiscos are superimposed, the hairpin region of the neighboring small subunit in Galdieria enzyme and apical portion of insertion residues 52-63 characteristic of small subunits in higher plant enzymes are almost overlapped to each other.
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==About this Structure==
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Crystal structure of carboxylase reaction-oriented ribulose 1, 5-bisphosphate carboxylase/oxygenase from a thermophilic red alga, Galdieria partita.,Sugawara H, Yamamoto H, Shibata N, Inoue T, Okada S, Miyake C, Yokota A, Kai Y J Biol Chem. 1999 May 28;274(22):15655-61. PMID:10336462<ref>PMID:10336462</ref>
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1BWV is a [[http://en.wikipedia.org/wiki/Protein_complex Protein complex]] structure of sequences from [[http://en.wikipedia.org/wiki/Galdieria_partita Galdieria partita]] with MG and CAP as [[http://en.wikipedia.org/wiki/ligands ligands]]. Active as [[http://en.wikipedia.org/wiki/Ribulose-bisphosphate_carboxylase Ribulose-bisphosphate carboxylase]], with EC number [[http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.39 4.1.1.39]]. Structure known Active Sites: MGA, MGC, MGE and MGG. Full crystallographic information is available from [[http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BWV OCA]].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Orderly disposition of heterogeneous small subunits in D-ribulose-1,5-bisphosphate carboxylase/oxygenase from spinach., Shibata N, Inoue T, Fukuhara K, Nagara Y, Kitagawa R, Harada S, Kasai N, Uemura K, Kato K, Yokota A, Kai Y, J Biol Chem. 1996 Oct 25;271(43):26449-52. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8900108 8900108]
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</div>
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[[Category: Galdieria partita]]
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<div class="pdbe-citations 1bwv" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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[[Category: Ribulose-bisphosphate carboxylase]]
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[[Category: Inoue, T.]]
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[[Category: Kai, Y.]]
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[[Category: Miyake, C.]]
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[[Category: Shibata, N.]]
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[[Category: Sugawara, H.]]
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[[Category: Yamamoto, H.]]
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[[Category: Yokota, A.]]
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[[Category: CAP]]
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[[Category: MG]]
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[[Category: carbon dioxide fixation]]
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[[Category: complex (rubisco/reaction intermediate)]]
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[[Category: high specificity factor]]
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[[Category: lyase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Oct 30 14:58:00 2007''
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==See Also==
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*[[RuBisCO 3D structures|RuBisCO 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Galdieria partita]]
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[[Category: Large Structures]]
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[[Category: Inoue T]]
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[[Category: Kai Y]]
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[[Category: Miyake C]]
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[[Category: Shibata N]]
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[[Category: Sugawara H]]
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[[Category: Yamamoto H]]
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[[Category: Yokota A]]

Current revision

Activated Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase (RUBISCO) Complexed with the Reaction Intermediate Analogue 2-Carboxyarabinitol 1,5-Bisphosphate

PDB ID 1bwv

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