This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
1kw8
From Proteopedia
(Difference between revisions)
| (9 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:1kw8.png|left|200px]] | ||
| - | + | ==Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex== | |
| + | <StructureSection load='1kw8' size='340' side='right'caption='[[1kw8]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[1kw8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp._KKS102 Pseudomonas sp. KKS102]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1gdg 1gdg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KW8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KW8 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BPY:BIPHENYL-2,3-DIOL'>BPY</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NO:NITRIC+OXIDE'>NO</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kw8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kw8 OCA], [https://pdbe.org/1kw8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kw8 RCSB], [https://www.ebi.ac.uk/pdbsum/1kw8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kw8 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/BPHC_PSES1 BPHC_PSES1] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kw/1kw8_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kw8 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | == | + | ==See Also== |
| - | + | *[[Dioxygenase 3D structures|Dioxygenase 3D structures]] | |
| - | + | __TOC__ | |
| - | + | </StructureSection> | |
| - | + | [[Category: Large Structures]] | |
| - | [[ | + | [[Category: Pseudomonas sp. KKS102]] |
| - | + | [[Category: Fukuda M]] | |
| - | + | [[Category: Masai E]] | |
| - | < | + | [[Category: Nishizaki T]] |
| - | [[Category: | + | [[Category: Nonaka T]] |
| - | [[Category: Pseudomonas sp.]] | + | [[Category: Sato N]] |
| - | [[Category: Fukuda | + | [[Category: Sazaki G]] |
| - | [[Category: Masai | + | [[Category: Senda T]] |
| - | [[Category: Nishizaki | + | [[Category: Sugimoto K]] |
| - | [[Category: Nonaka | + | [[Category: Takahashi Y]] |
| - | [[Category: Sato | + | [[Category: Uragami Y]] |
| - | [[Category: Sazaki | + | |
| - | [[Category: Senda | + | |
| - | [[Category: Sugimoto | + | |
| - | [[Category: Takahashi | + | |
| - | [[Category: Uragami | + | |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of BphC-2,3-dihydroxybiphenyl-NO complex
| |||||||||||
Categories: Large Structures | Pseudomonas sp. KKS102 | Fukuda M | Masai E | Nishizaki T | Nonaka T | Sato N | Sazaki G | Senda T | Sugimoto K | Takahashi Y | Uragami Y
