This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1fx7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:20, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1fx7.png|left|200px]]
 
-
{{STRUCTURE_1fx7| PDB=1fx7 | SCENE= }}
+
==CRYSTAL STRUCTURE OF THE IRON-DEPENDENT REGULATOR (IDER) FROM MYCOBACTERIUM TUBERCULOSIS==
-
 
+
<StructureSection load='1fx7' size='340' side='right'caption='[[1fx7]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
===CRYSTAL STRUCTURE OF THE IRON-DEPENDENT REGULATOR (IDER) FROM MYCOBACTERIUM TUBERCULOSIS===
+
== Structural highlights ==
-
 
+
<table><tr><td colspan='2'>[[1fx7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FX7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FX7 FirstGlance]. <br>
-
{{ABSTRACT_PUBMED_11053439}}
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
 
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
==About this Structure==
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fx7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fx7 OCA], [https://pdbe.org/1fx7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fx7 RCSB], [https://www.ebi.ac.uk/pdbsum/1fx7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fx7 ProSAT]</span></td></tr>
-
[[1fx7]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FX7 OCA].
+
</table>
-
 
+
== Function ==
-
==Reference==
+
[https://www.uniprot.org/uniprot/IDER_MYCTU IDER_MYCTU] Metal-dependent DNA-binding protein that controls transcription of many genes involved in iron metabolism. Acts as a repressor of siderophore biosynthesis and as a positive modulator of iron storage. Also regulates expression of transporters, proteins involved in siderophore synthesis, iron storage and transcriptional regulators.<ref>PMID:11722747</ref> <ref>PMID:12065475</ref>
-
<ref group="xtra">PMID:011053439</ref><references group="xtra"/>
+
== Evolutionary Conservation ==
-
[[Category: Mycobacterium tuberculosis]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Feese, M D.]]
+
Check<jmol>
-
[[Category: Goranson-Siekierke, J.]]
+
<jmolCheckbox>
-
[[Category: Hol, W J.G.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fx/1fx7_consurf.spt"</scriptWhenChecked>
-
[[Category: Holmes, R K.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Ingason, B P.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Dtxr]]
+
</jmolCheckbox>
-
[[Category: Ider]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fx7 ConSurf].
-
[[Category: Iron-dependent regulator]]
+
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mycobacterium tuberculosis]]
[[Category: Mycobacterium tuberculosis]]
-
[[Category: Signaling protein]]
+
[[Category: Feese MD]]
 +
[[Category: Goranson-Siekierke J]]
 +
[[Category: Hol WJG]]
 +
[[Category: Holmes RK]]
 +
[[Category: Ingason BP]]

Current revision

CRYSTAL STRUCTURE OF THE IRON-DEPENDENT REGULATOR (IDER) FROM MYCOBACTERIUM TUBERCULOSIS

PDB ID 1fx7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools